RNA id: TU200326


Basic Information

Item Value
RNA id TU200326
length 318
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G176355
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2849609 ~ 2849926 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGGTGTAAGCCAGCATGTTAGACAAGGAGGCCCCGAGGGCCTACCCGTCACACGCGGCGTCAGCTAGCGGCCACTAAAGTTCTAGGAGCAAAAATAGAACCAAGTAAACAACAATGGTAACTACTTAGCTCAACTAGAGCTAAAGGAGACCAAGCTCAAGGAAGTAAATGCATAAAACCACACAAATAGCTGGTTTTAACACAAGAACTTACCCTGAGAGGCAAGCCACTCAGAAAAAGTACTCAGTAAAAGCACCTTTTACTCTCTAAGCGAGAGGAGTACAAAGCCGAGCTCCAACATGACACATAGGAGGCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200299 lncRNA upstream 23302 2825982 ~ 2826307 (+) True G176328
TU200294 lncRNA upstream 26507 2822713 ~ 2823102 (+) True G176323
TU200274 lncRNA upstream 44059 2805323 ~ 2805550 (+) True G176303
TU200268 lncRNA upstream 50003 2799309 ~ 2799606 (+) True G176297
TU200265 lncRNA upstream 51116 2798212 ~ 2798493 (+) True G176294
TU200328 lncRNA downstream 2452 2852378 ~ 2852726 (+) True G176357
TU200333 lncRNA downstream 13098 2863024 ~ 2863369 (+) True G176361
TU200442 lncRNA downstream 619576 3469502 ~ 3469710 (+) True G176466
TU200448 lncRNA downstream 627982 3477908 ~ 3478177 (+) True G176472
TU200451 lncRNA downstream 632913 3482839 ~ 3483057 (+) True G176475
CI01000037_02755842_02769590.mRNA mRNA upstream 78443 2755842 ~ 2771166 (+) True CI01000037_02755842_02769590
CI01000037_02700254_02707760.mRNA mRNA upstream 141135 2699595 ~ 2708474 (+) True CI01000037_02700254_02707760
CI01000037_02527352_02576225.mRNA mRNA upstream 272905 2526102 ~ 2576704 (+) True CI01000037_02527352_02576225
CI01000037_02414352_02418569.mRNA mRNA upstream 430857 2414352 ~ 2418752 (+) True CI01000037_02414352_02418569
CI01000037_02405252_02406221.mRNA mRNA upstream 443172 2404783 ~ 2406437 (+) True CI01000037_02405252_02406221
CI01000037_02907711_02908412.mRNA mRNA downstream 57137 2907063 ~ 2908634 (+) True CI01000037_02907711_02908412
CI01000037_02909777_02910445.mRNA mRNA downstream 59674 2909600 ~ 2910489 (+) True CI01000037_02909777_02910445
CI01000037_02965392_02966406.mRNA mRNA downstream 115466 2965392 ~ 2966433 (+) True CI01000037_02965392_02966406
CI01000037_03102630_03108094.mRNA mRNA downstream 252704 3102630 ~ 3109016 (+) True CI01000037_03102630_03108094
CI01000037_03120937_03121997.mRNA mRNA downstream 271011 3120937 ~ 3122022 (+) True CI01000037_03120937_03121997
TU200317 other upstream 9556 2839760 ~ 2840053 (+) True G176346
TU199493 other upstream 879218 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 1172202 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198741 other upstream 1235335 1613876 ~ 1614274 (+) False G174949
TU198740 other upstream 1235335 1613890 ~ 1614274 (+) False G174949
TU200353 other downstream 126936 2976862 ~ 3087968 (+) True G176377
TU200774 other downstream 1363357 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile