RNA id: TCONS_00003243


Basic Information

Item Value
RNA id TCONS_00003243
length 1888
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_000775
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56660197 ~ 56662651 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCAGAGAGTGGAGATGGATAGGCAAAGGACCTagagccgggaatcaaactctgGTCGCTGCGAGCTCCTAGGTGCTATATGTCGACGCACTTACCACTTGGCTATTGGCTTcgataactcatttccaataactgaagatactagtaatcagcttaaagtgacatataaaggcataactaggttaattgggtaagttGGGTAACcctaataaggcaagtcattgtttaacagtggtttgttattGTAGCTAATATtatttaaggggctaataatatcgaccttaaaataggttaaaaaaataaataaataaagctgcttttattatagctaaaataaagcaaataagaccttctccagatgaagaaatattataggaaatactgtgaaaaattcctgaacctgttaaacattatttgggaaatatttgaaagagaaaaaaCACTTCACGataggactaataattctgacatcaactgtatgtggATTTAAATACGGTGTTAAATGCACTACGGTTTAGCTGATGCAGAGTGGTGctgaaaaaatactgaaaaagtgACCAATGTATTTACAGATccaattactaataataataacaccaaaaacatgaataataataatgataaaaaactgTTGAGCTAAACATTTAATGAGATGCTGCAGTGGCTTCTTTCTTCGCTTGTTCCTTCTGGATTTTAGGCTTCGTAGCATTTGTTTCAGCTGGAGCAGCTTCCTTCTTTGTTTGTTCCTTCTGGATTTTGGGCTTCATAGGATTTGTGTCAGCTGGAGTGGgctctttctttgtttgtttcttctggaTTTTAGGCTTCGTAATATTTGTTTCAGCTGCATCGGCTTCTTTCTTTGCTTGTTCCTTCTGAATTTTAGGCTTCGTATCATTTGTGTCCGCTGGAGCGgcttctttctttgtttgtttcctTTGGATTAAAAGTGTCGTAACATTTGTGTCAGCTGCATCGTCTTCTTTCGTTGTTTGTTTCCTTTGGATTTTAAGCTTCGTATCATTTGTGTCAGCTGCATCGTCTTCTTTCGTTGTTTGTTTCCTTTGGATTTTAAGTGTCGTAACATCTGTGTCAGCTGCATCGtcttctttctttgtttgtttcctTTGGATTTTAAGTGTCGTATCATTTGTGTCAGCTGCATCGtcttctttctttgtttgtttcctTTGGATTTTAAGTGTCGTAACATCTGTGTCAGCTGCAtcgtcttctttttttgtttgtttcttctggaTTTTAGGCTTCGTAACATTTGCGTCAGTGGCATCGgcttctttctttgtttgtttcttctggaTTTTAGGCTTCGTATCAGTTGTGTCAGCTGCatcatcttctttttttgtttgcctCTTCTGGATTCTAGGCTTCCTAGCATTTGTGTCAGCTTCAGCAGCTTCTTTCTCTGTTTGATTCTTCATAATTTTAGACATCATAACATTTGCGTCAGCTGCAGTGACTTCTTTCTCTGTTTGATTCTTCTGAATTTTAGACATCATAACATTTGCGTTAGCTGCAGCGGCTTCTTTCTCTGTTTGATTCATCTGGGTTTTAGACACGGTACCATTTTTGTCAGCTGCTGCAGCTTCTTTCTCTGTTTGATTCATCTGGGTTTTAGACATCATAACATTTGCGTCAGCTACAGAGACTTCTTTTTCTGTTTGATTCTTCTGGGTTTTAGTCATCGTAGCATTTGCGTCAGCTGCTGCAGCTTCTTTCTCTGTTTGATTCTTCTGGGTTTTAGTCATCGTAGCATTTGCGTCAGCTGCAGCAACTCCTTTCTCGGTTTGATTCTTCTGAATATTAGCAGCTTTTTCATTCCCATTCTCCTTCATGTTTAGGGTCTCCTTTGGCATTTTATCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003239 lncRNA upstream 55845 56561253 ~ 56604352 (+) True XLOC_000772
TCONS_00003238 lncRNA upstream 56027 56561226 ~ 56604170 (+) False XLOC_000772
TCONS_00003241 lncRNA upstream 56387 56569514 ~ 56603810 (+) True XLOC_000774
TCONS_00003240 lncRNA upstream 95845 56562827 ~ 56564352 (+) True XLOC_000773
TCONS_00003237 lncRNA upstream 103892 56416638 ~ 56556305 (+) True XLOC_000768
TCONS_00002885 lncRNA downstream 6507 56669158 ~ 56683634 (+) True XLOC_000776
TCONS_00002886 lncRNA downstream 143483 56806134 ~ 56807602 (+) True XLOC_000781
TCONS_00003245 lncRNA downstream 156502 56819153 ~ 56900288 (+) False XLOC_000783
TCONS_00003244 lncRNA downstream 156502 56819153 ~ 56900288 (+) False XLOC_000783
TCONS_00001269 lncRNA downstream 168147 56830798 ~ 56834002 (+) True XLOC_000785
TCONS_00001262 mRNA upstream 131005 56520836 ~ 56529192 (+) True XLOC_000771
TCONS_00001260 mRNA upstream 137150 56502706 ~ 56523047 (+) False XLOC_000771
TCONS_00001261 mRNA upstream 137150 56520836 ~ 56523047 (+) False XLOC_000771
TCONS_00001259 mRNA upstream 191596 56463494 ~ 56468601 (+) True XLOC_000770
TCONS_00001258 mRNA upstream 202160 56447107 ~ 56458037 (+) True XLOC_000769
TCONS_00001263 mRNA downstream 92885 56755536 ~ 56760851 (+) True XLOC_000777
TCONS_00001264 mRNA downstream 105612 56768263 ~ 56769327 (+) True XLOC_000778
TCONS_00001265 mRNA downstream 116844 56779495 ~ 56786921 (+) True XLOC_000779
TCONS_00001266 mRNA downstream 138370 56801021 ~ 56805426 (+) True XLOC_000780
TCONS_00001267 mRNA downstream 151194 56813845 ~ 56816695 (+) True XLOC_000782
TCONS_00001233 other upstream 1362946 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 1531618 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 2474041 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 2598987 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 3272316 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001304 other downstream 685247 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 1497500 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 2468641 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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