RNA id: TCONS_00016411


Basic Information

Item Value
RNA id TCONS_00016411
length 567
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_007925
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 30297374 ~ 30298171 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTATTGCACAGTCTCGTGCACGAGTAAGCTGTTACTCCTCATCATCATCTCACCAGAGCTGACGGAGCAGCAGTTCTCGCTAGATCCACGTCTCGAGGGTTCAGAAGAATCTACCTCAGACATTTCTCGATCTCCACACTCTGGAAAGCTTTCAGAGCCTCCATCACTGGACTGAGTGTGCTTTGGGTTTACTATCAAAAGAGTCAAATTCTCCTTCCAGTTGTCAAGTTTTAAGTCCACAGGAATTGTCCTGCATGATTTTGCTAGATTTGCGGAAGAAGTCTCACATTTTGCAGGACAAGTGAGACAGTCCTTCATTTCTACATCAGGAGGACTGTCTGAACCGCCACAGCTCAAACTGGTGGAGCTCCTCAGAGAATCGAGGGAATGTTCACTAGGGCAGGTGATGTTATTTCCATTTCTGTCCTCAAAGGAGAAAGTAAGATTTATGGGTTTACGTGTGGTCTCCATGGAGCAAATTCACAGAGGGATACAGTATGTGAATAGTACACAGCAAGTTGAACCTCAGCTTTTCAGGATTATTTGTTGAAGTCCATTATGGGAAtg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016410 lncRNA downstream 497381 29785289 ~ 29799993 (-) True XLOC_007921
TCONS_00016409 lncRNA downstream 513667 29782888 ~ 29783707 (-) False XLOC_007921
TCONS_00016057 lncRNA downstream 590331 29706704 ~ 29707043 (-) True XLOC_007920
TCONS_00016056 lncRNA downstream 595740 29701320 ~ 29701634 (-) True XLOC_007919
TCONS_00016055 lncRNA downstream 1382188 28911909 ~ 28915186 (-) False XLOC_007917
TCONS_00015468 lncRNA upstream 142577 30440748 ~ 30452193 (-) True XLOC_007928
TCONS_00015475 lncRNA upstream 213310 30511481 ~ 30523475 (-) False XLOC_007930
TCONS_00015476 lncRNA upstream 213310 30511481 ~ 30536884 (-) True XLOC_007930
TCONS_00015485 lncRNA upstream 421010 30719181 ~ 30720358 (-) True XLOC_007936
TCONS_00015487 lncRNA upstream 447273 30745444 ~ 30747686 (-) True XLOC_007937
TCONS_00015461 mRNA downstream 70492 30156449 ~ 30226882 (-) False XLOC_007924
TCONS_00015460 mRNA downstream 70492 30156449 ~ 30226882 (-) False XLOC_007924
TCONS_00015462 mRNA downstream 70496 30156529 ~ 30226878 (-) True XLOC_007924
TCONS_00015459 mRNA downstream 156212 30105611 ~ 30141162 (-) True XLOC_007923
TCONS_00015455 mRNA downstream 391165 29808761 ~ 29906209 (-) False XLOC_007922
TCONS_00015463 mRNA upstream 60953 30359124 ~ 30366196 (-) True XLOC_007926
TCONS_00015464 mRNA upstream 69431 30367602 ~ 30387894 (-) False XLOC_007927
TCONS_00015465 mRNA upstream 69863 30368034 ~ 30390145 (-) True XLOC_007927
TCONS_00015466 mRNA upstream 128785 30426956 ~ 30452218 (-) False XLOC_007928
TCONS_00015471 mRNA upstream 155171 30453342 ~ 30490763 (-) False XLOC_007929
TCONS_00015446 other downstream 944251 29353007 ~ 29353123 (-) True XLOC_007918
TCONS_00015433 other downstream 2169096 28128158 ~ 28128278 (-) True XLOC_007910
TCONS_00015429 other downstream 2740752 27556486 ~ 27556622 (-) True XLOC_007906
TCONS_00015426 other downstream 3121533 27175726 ~ 27175841 (-) True XLOC_007904
TCONS_00015386 other downstream 4698374 25595871 ~ 25599000 (-) True XLOC_007883
TCONS_00015467 other upstream 139751 30437922 ~ 30452210 (-) False XLOC_007928
TCONS_00015524 other upstream 1028430 31326601 ~ 31326717 (-) True XLOC_007951
TCONS_00015525 other upstream 1168500 31466671 ~ 31466782 (-) False XLOC_007952
TCONS_00015526 other upstream 1168855 31467026 ~ 31467130 (-) False XLOC_007952
TCONS_00015527 other upstream 1168996 31467167 ~ 31467260 (-) False XLOC_007952

Expression Profile

//