RNA id: TCONS_00015465


Basic Information

Item Value
RNA id TCONS_00015465
length 3627
RNA type mRNA
GC content 0.42
exon number 12
gene id XLOC_007927
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 30367602 ~ 30390145 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGAGCTTGAAGAAGGACGGGGCAAACTTGACACAGGACTTGGGAAGGACTGACTTCGAGCTTGTGagctttttaaagaaatcagtggAGATCACTGAGAGCTGTGTGTGGTTGGGGGTGTGTTCCTGTGTATTTGGGCGAAAGCCATAGGAACTTTACTTCCATAGCGTGATCCTGCAGCTGCCAGTCAGTCATCAGTCGGAAGAATGCTAGAACATTGCCTCACATTTGGTCGCTCCCTTGTGAGGAGGAAGAATGTGGACCAGGGCTGTCTGGAGGAGTCCAAGCTGTGCCGCTGCCTCTCAACTGTTGATCTCATTGCTCTGGGGGTTGGAAGCACACTGGGGGCCGGTGTCTATGTACTCGCTGGTGAGGTGGCCAAAGGCAGTTCCGGCCCCAGCATCGTTGTGTCCTTCCTCATCGCTGCATTAGCATCTGTGATGGCTGGTTTGTGCTATGCTGAGTTTGGTGCCCGGGTACCCAAGACTGGCTCTGCCTATCTGTACAGCTATGTGACGGTAGGAGAGCTCTGGGCTTTCATCACCGGATGGAACCTCATTCTGTCATACGTCATCGGCACTTCCAGTGTGGCACGTGCCTGGAGTGGGACATTTGATGAGATTATAGGCGGTCACATTGAAAAATTCTGCAAAATGTACTTCAAAATGAGTTTGCCTGGCCTGGCGGAGTACCCTGATTTCTTTGCTGTTTGCCTGATCTTACTTCTGTCAGGCCTACTCTCCTTTGGGGTGAAGGAATCAGCCTGGGTCAACAAAATCTTCACAGCAGTAAATGTGCTTGTGCTCATGTTCGTTATCATCTCTGGATTTGTCAAAGGAGACTCTCTCAATTGGAACATATCAGAGGAATCGCTCGTAAATTACACAGTTGTCAAAAGAAACATCTCGAGTGCTGCTAATGTCACCAGCGATTATGGGGCAGGAGGCTTTTTTCCGTATGGATTTGGCGGAACGTTGGCTGGTGCGGCCACCTGCTTTTACGCCTTTGTGGGATTCGACTGTATTGCAACCACAGGTGAAGAGGTGAAGAATCCCCAGAGGGCCATTCCCATTGGCATAGTGGTTTCCCTTCTGGTCTGCTTCCTTGCCTACTTTGGTGTTTCAGCAGCCCTCACCCTCATGATGCCCTACTATCTGCTGGATGAGAAGAGTCCTCTACCTTTGGCTTTTGAGTATGTAGGCTGGGGGCCTGCAAAATATGTAGTTGCGGCAGGATCACTTTGTGCTCTTTCAACCAGCCTGTTGGGCTCAATGTTCCCCCTGCCCCGTATTCTGTTTGCCATGGCACGAGATGGCGTGCTATTCAGATTTCTTTCCAAACTGAGTAAGCGCCAGTCGCCAGTGGCTGCCACTATGGCAGCAGGCACTACCGCGGCTATCATGGCTTTTCTGTTCGACTTGAAAGCGCTGGTGGATATGATGTCTATTGGAACATTGCTGGCTTATTCCCTTGTGGCTGCTTGTGTTCTTATACTCAGATATCAGCCAGATGCTTCGTTCGAGAGGTCGAGGATCAGTGAAGGGAAGGAGGAGGTCGGAGAGTCTGAACTGACAGAGTCTGAGTCTCATCTGAACATGCTGAAGGATGGAGGAGTAACGCTGCGCTCTCTGCTCCATCCTCCACTGCTGCCCACTAAAAATACCTCCAGTGTGGTCAACGTGTCTGTCATCATCACAGTGCtggttgtgtgtgttgtgagcaCACTGAACACATACTACGGACAAGCCATTATTGCAATGGAGCTTTGGGCACTGGGAGTATTAGCTGCATCACTGTTCATCTTCATCATATGTGTCTTTCTTATTTGTAGACAACCACAAACAAGGAAGAAGGTTTCCTTTATGGTTCCTCTTTTGCCCTTTCTACCCATCTTGAGTATATTTGTCAATGTGTACCTCATGGTTCAGCTCAGCGGAGACACGTGGATCCGTTTCTCCATCTGGATGGCCATAGGTTTTCTCATCTATTTCGGCTATGGGATGTGGCACAGTGATGAACGCAAGCGACATCTACAGAACTGTGCTGTCGCAACAGAGAAAAAGACACTGACCGGAAATGAAGGCTTTGTGGAGAAcaagacacacacagagaagacCAGCCCATGCTAAAGAGCAGAAGACCAACTCTCACTTTAACTATAGCTGTTATTCACAGCGTTCCCCAGCCGGCTGACAGACGTAAGCTCTGTGCTTTCAGTCACTGCCGTCATGAACAATTACTGAAACACTTCTCACTGCTGATGTGAGTTTATAATGTAGTACAGTAGGTCATTAGGGGGGTACGATCTGACAAAACCAATGCTTCGATTATAGAAATGACCCTCAAAATAATGAAAATCAATATAAATTGTCATTTGACTTATATTCATGGTAGTTTCCGATAATAATGAATAGTGACCAAATGATTTTTGTATACTTGGATTTCTCATCGCAATATTTAGAACTTTTTAAATAGCATTGAAGGGCTGTCAAATATTTACAATCCCTTGAAGACAAACCTCAGCATGTGAGTGATTTGATTTCAGTGTTTGGATGAGAAAGGGAAAGCTTGTGCCTTTTTTTCATTACAAAAAAGTATTATGATTTCTGCAGTCAGTCTCTCAAGTTTacttttactgtgaaagtaaatataacaacagtaatattttactacagTATTCTTAGTTGGGAGAAATAAGTGTAAAATGATAAGTGTCCTTATCGAATGTGGGAtattaacactttaaaaaatatttgtaaatggaCAGTTTTCCCTATTTTGAGATTTATGTTTTTCCCctcttatttatgcttttgaattgcattattggaccTTAATTTTTACTTCAAAAGATTTGGATGAAAATTTGtccaaaaaaaagtcaataaaattcactttggtaaactgtagaatttaattttcaacataaaaagtgGACAGAGCTGAGATAAAActcacataatgcaattcacaaccgtaaataaacataaaacaacagatgaataattaacagatttttttcagtgcaaaTAATGGTCTAACTTTGATTTAGAATTAATTCTATTGACTACATCTTTCTGAATGTGCCAGAGATGTTAAGCTgctcagataaaaaaataataataatgttttcttgTATTAAACACTAGTTCCTTATTTTTACCCACGTTATTTGTGTTAGCATTGAATGTTTGACAGGACATTCTACTACAGTATTCATACAGTAGGTCAACCTGTTGTTTAACAACCATAAGGTTTGAAGACGTTAAAGAGGAGCAAGTAATCAGTGTTTTGTCTTGTACAGTTACGTTTATTCAATTTGATTTCTTTCTATATTTGTTTACTTCacagagacttttattttgtttttgatgaATAACAATCATTGGCTGTTGTCGTTTGAAAATTGACAATCTGTTTAATTCAGTTAATGATGGAAAGTGTTTCTTCTGCTAACTAATGGTCTTCTGTTGTGCCACTAATGCatgaatgtattattttgttttctctttAGAGCTTGTGTATAGTTGTTTTAACCTTTTTTAGTGAGGGAAGTAAAGTATGGATCGTCATATCAATGCAGAGTGGTTTCATACAAAGCAATAAAagattcctttttttaaaaa

Function

GO:

id name namespace
GO:0097638 L-arginine import across plasma membrane biological_process
GO:0055085 transmembrane transport biological_process
GO:1903352 L-ornithine transmembrane transport biological_process
GO:0006865 amino acid transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function
GO:0015181 arginine transmembrane transporter activity molecular_function
GO:0015189 L-lysine transmembrane transporter activity molecular_function
GO:0000064 L-ornithine transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-041212-5 Predicted to enable L-lysine transmembrane transporter activity; L-ornithine transmembrane transporter activity; and arginine transmembrane transporter activity. Predicted to be involved in L-arginine import across plasma membrane and L-ornithine transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SLC7A2 (solute carrier family 7 member 2).

Ensembl:

ensembl_id ENSDART00000045423

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016411 lncRNA downstream 69863 30297374 ~ 30298171 (-) True XLOC_007925
TCONS_00016410 lncRNA downstream 568041 29785289 ~ 29799993 (-) True XLOC_007921
TCONS_00016409 lncRNA downstream 584327 29782888 ~ 29783707 (-) False XLOC_007921
TCONS_00016057 lncRNA downstream 660991 29706704 ~ 29707043 (-) True XLOC_007920
TCONS_00016056 lncRNA downstream 666400 29701320 ~ 29701634 (-) True XLOC_007919
TCONS_00015468 lncRNA upstream 50603 30440748 ~ 30452193 (-) True XLOC_007928
TCONS_00015475 lncRNA upstream 121336 30511481 ~ 30523475 (-) False XLOC_007930
TCONS_00015476 lncRNA upstream 121336 30511481 ~ 30536884 (-) True XLOC_007930
TCONS_00015485 lncRNA upstream 329036 30719181 ~ 30720358 (-) True XLOC_007936
TCONS_00015487 lncRNA upstream 355299 30745444 ~ 30747686 (-) True XLOC_007937
TCONS_00015463 mRNA downstream 1838 30359124 ~ 30366196 (-) True XLOC_007926
TCONS_00015461 mRNA downstream 141152 30156449 ~ 30226882 (-) False XLOC_007924
TCONS_00015460 mRNA downstream 141152 30156449 ~ 30226882 (-) False XLOC_007924
TCONS_00015462 mRNA downstream 141156 30156529 ~ 30226878 (-) True XLOC_007924
TCONS_00015459 mRNA downstream 226872 30105611 ~ 30141162 (-) True XLOC_007923
TCONS_00015466 mRNA upstream 36811 30426956 ~ 30452218 (-) False XLOC_007928
TCONS_00015471 mRNA upstream 63197 30453342 ~ 30490763 (-) False XLOC_007929
TCONS_00015470 mRNA upstream 63197 30453342 ~ 30490763 (-) False XLOC_007929
TCONS_00015469 mRNA upstream 63197 30453342 ~ 30490763 (-) False XLOC_007929
TCONS_00015472 mRNA upstream 63902 30454047 ~ 30490465 (-) False XLOC_007929
TCONS_00015446 other downstream 1014911 29353007 ~ 29353123 (-) True XLOC_007918
TCONS_00015433 other downstream 2239756 28128158 ~ 28128278 (-) True XLOC_007910
TCONS_00015429 other downstream 2811412 27556486 ~ 27556622 (-) True XLOC_007906
TCONS_00015426 other downstream 3192193 27175726 ~ 27175841 (-) True XLOC_007904
TCONS_00015386 other downstream 4769034 25595871 ~ 25599000 (-) True XLOC_007883
TCONS_00015467 other upstream 47777 30437922 ~ 30452210 (-) False XLOC_007928
TCONS_00015524 other upstream 936456 31326601 ~ 31326717 (-) True XLOC_007951
TCONS_00015525 other upstream 1076526 31466671 ~ 31466782 (-) False XLOC_007952
TCONS_00015526 other upstream 1076881 31467026 ~ 31467130 (-) False XLOC_007952
TCONS_00015527 other upstream 1077022 31467167 ~ 31467260 (-) False XLOC_007952

Expression Profile

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