RNA id: CI01000039_04078795_04079273.mRNA


Basic Information

Item Value
RNA id CI01000039_04078795_04079273.mRNA
length 272
RNA type mRNA
GC content 0.44
exon number 3
gene id CI01000039_04078795_04079273
representative False

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4078745 ~ 4079273 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAGACTATTGCAGCTTTTGTTCTTCTTGCCTGCCTGATCGCTGTAGGAGTGAAAGCGCAGGGCAGGTCTTCGAAGGGCAGGTGCTTCTGTGCAGACAAAGGTGCAAACATGGTTTTAGTGAAGAACATTGAGAAGGTTGAAATCCTCCCTCCAAGTCCATCTTGTCGCAAACATGAGATTATTGTCACTCTGAAGAATGGTGCAGGACGGAAATGCATGAATCCAGAGTCAAAATTCACTCAAAATATCATAAAGGCTCTTGAGAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204545 lncRNA upstream 7223 4070588 ~ 4071572 (+) True G180146
TU204543 lncRNA upstream 7223 4070588 ~ 4071572 (+) False G180146
TU204539 lncRNA upstream 12142 4066391 ~ 4066653 (+) True CI01000039_04065787_04066284
TU204557 lncRNA downstream 9698 4088971 ~ 4089226 (+) True G180155
TU204558 lncRNA downstream 11829 4091102 ~ 4091522 (+) False G180156
TU204560 lncRNA downstream 11829 4091102 ~ 4091608 (+) True G180156
TU204562 lncRNA downstream 13215 4092488 ~ 4092835 (+) True G180157
TU204565 lncRNA downstream 46275 4125548 ~ 4125931 (+) True G180160
CI01000039_04070151_04075216.mRNA mRNA upstream 3434 4070151 ~ 4075361 (+) False CI01000039_04070151_04075216
CI01000039_04065787_04066284.mRNA mRNA upstream 12164 4065713 ~ 4066631 (+) False CI01000039_04065787_04066284
CI01000039_04062068_04062375.mRNA mRNA upstream 15857 4062003 ~ 4062938 (+) False CI01000039_04062068_04062375
CI01000039_04058417_04059141.mRNA mRNA upstream 19292 4058343 ~ 4059503 (+) False CI01000039_04058417_04059141
CI01000039_04048342_04049635.mRNA mRNA upstream 28832 4048079 ~ 4049963 (+) False CI01000039_04048342_04049635
CI01000039_04108687_04120437.mRNA mRNA downstream 29414 4108687 ~ 4120437 (+) True CI01000039_04108687_04120437
CI01000039_04198172_04200073.mRNA mRNA downstream 117973 4197246 ~ 4200160 (+) True CI01000039_04198172_04200073
CI01000039_04223888_04224220.mRNA mRNA downstream 144615 4223888 ~ 4224636 (+) False CI01000039_04223888_04224220
CI01000039_04244908_04247540.mRNA mRNA downstream 165231 4244504 ~ 4247540 (+) True CI01000039_04244908_04247540
CI01000039_04295776_04307914.mRNA mRNA downstream 216503 4295776 ~ 4307914 (+) True CI01000039_04295776_04307914
TU204364 other upstream 28823 4048293 ~ 4049972 (+) True CI01000039_04048342_04049635
TU204263 other upstream 653240 3424037 ~ 3425555 (+) True G179903
TU204152 other upstream 946611 3129572 ~ 3132184 (+) True G179798
TU203855 other upstream 1580176 2497674 ~ 2498619 (+) True G179528
TU202619 other upstream 3093043 985578 ~ 985752 (+) False CI01000039_00982878_00985676
TU204559 other downstream 11725 4090998 ~ 4091522 (+) False G180156
TU204561 other downstream 11725 4090998 ~ 4091608 (+) False G180156
TU204573 other downstream 144306 4223579 ~ 4223779 (+) False G180162
TU204575 other downstream 144306 4223579 ~ 4223779 (+) True G180162
TU204572 other downstream 144320 4223593 ~ 4223779 (+) False G180162

Expression Profile