RNA id: TU204572


Basic Information

Item Value
RNA id TU204572
length 187
RNA type TUCP
GC content 0.43
exon number 1
gene id G180162
representative False

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4223579 ~ 4223779 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATGGCCGACCGAGAATGACACACGCTGTGTTTTATCCAGAATTTGCCAAATTTTCCTGAATATATAGTTTAATTATAGTCTTAAACAAATAGCTTATGATGTTCGAGTGTTTATTGTAAATTATGCTTTCTTGAATCGTGGAGGCTGACGCTTCATTTGTGTTTATTAATATCTTGACCCTAACGCGTGTTTTTAACATCACAACATGGCCACAGTAGCAGCCAAGCGCGAGGGACCGCAGTTCATCAGTGAGGTGGCCGTCAGAGGAAACAACGCTGTGCTCGACTACTGCCGCACGTCCGTGTCTGCTCTGTCCGGAGCGACAGCGGGCATCCTTGGGCTAACGGGACTCTACGGCTTTGTCTTTTACTTCCTTGCTTCTTTCCTGCTGTCTTTACTCCTGATTCTCAAAGCCGGTCGCCGATGGAACAAGTGCTTCAAATCTCGACGTCTGCTCTTTACCGGAGGCCTCGTGGGCGGCCTCTTTACTTACGTGCTGTTCTGGACTTTCCTCTACGGAATGGTGCATGTGTACTGAAGGGATTCGGACAGTACAGCAGCCGTGTAGATGTAGAACAGTAACATGATAGAGATGCCTCAGGGTAGAGAGTGCTGATTGATGTACCACAGATCTTGTCCGTGACCTTACTTCCGTTTAGCCATTAACATTTAAAATATTTTCTCAGTACTAATTGCACTGAACTTTAGATATTTAAAAATTGTGTGTTTTCTTTCTTTCCTCTTGTAATTTAATATTTTCCTAACACTTGTTTCAGGGCTGGGATTGGATCTAGTGTTGTCCAACAGGGAGACTGATTTGTTTTCAGCTTGCTTTCTTTGTATGATGTGCAAAACTCTGTGAACTCCAGGCATCAATTGGAACCATGTAAAAAACACAATACAAACTTTAAACTGTATAAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204597 lncRNA upstream 867 4222478 ~ 4222726 (+) True G180180
TU204608 lncRNA upstream 3746 4219148 ~ 4219847 (+) True G180191
TU204600 lncRNA upstream 7407 4215970 ~ 4216186 (+) True G180183
TU204590 lncRNA upstream 8015 4214958 ~ 4215578 (+) True G180173
TU204582 lncRNA upstream 88221 4134383 ~ 4135372 (+) True G180165
TU204612 lncRNA downstream 14673 4239280 ~ 4239507 (+) True G180195
TU204566 lncRNA downstream 15706 4240313 ~ 4242363 (+) False G180161
TU204567 lncRNA downstream 15706 4240313 ~ 4242363 (+) False G180161
TU204568 lncRNA downstream 15706 4240313 ~ 4242363 (+) False G180161
TU204569 lncRNA downstream 15706 4240313 ~ 4242363 (+) False G180161
CI01000039_04198172_04200073.mRNA mRNA upstream 23433 4197246 ~ 4200160 (+) True CI01000039_04198172_04200073
CI01000039_04108687_04120437.mRNA mRNA upstream 103156 4108687 ~ 4120437 (+) True CI01000039_04108687_04120437
CI01000039_04078795_04079273.mRNA mRNA upstream 144320 4078795 ~ 4079273 (+) False CI01000039_04078795_04079273
CI01000039_04070151_04075216.mRNA mRNA upstream 148232 4070151 ~ 4075361 (+) False CI01000039_04070151_04075216
CI01000039_04065787_04066284.mRNA mRNA upstream 156962 4065713 ~ 4066631 (+) False CI01000039_04065787_04066284
CI01000039_04244908_04247540.mRNA mRNA downstream 19897 4244504 ~ 4247540 (+) True CI01000039_04244908_04247540
CI01000039_04295776_04307914.mRNA mRNA downstream 71169 4295776 ~ 4307914 (+) True CI01000039_04295776_04307914
CI01000039_04364813_04366029.mRNA mRNA downstream 139562 4364169 ~ 4366231 (+) True CI01000039_04364813_04366029
CI01000039_04370566_04373090.mRNA mRNA downstream 145020 4369627 ~ 4373462 (+) True CI01000039_04370566_04373090
CI01000039_04384983_04394003.mRNA mRNA downstream 160213 4384820 ~ 4394124 (+) True CI01000039_04384983_04394003
TU204561 other upstream 131985 4090998 ~ 4091608 (+) False G180156
TU204559 other upstream 132071 4090998 ~ 4091522 (+) False G180156
TU204548 other upstream 144030 4079419 ~ 4079563 (+) True G180149
TU205651 other downstream 619575 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182
TU206652 other downstream 3096077 7320684 ~ 7323274 (+) True G181961
TU206748 other downstream 3671269 7895876 ~ 7895913 (+) True G182040

Expression Profile