RNA id: CI01000039_05231247_05234144.mRNA


Basic Information

Item Value
RNA id CI01000039_05231247_05234144.mRNA
length 733
RNA type mRNA
GC content 0.49
exon number 3
gene id CI01000039_05231247_05234144
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 5231099 ~ 5234144 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTACAAAAGTACTTTGAATTGCAGCCACTGAACCGAGGGAAGCAATGGATTTTTGCAGGCACCACAACGAACAACATGGAGACTGTGAGGGAGAGTTTCAGTCAACTCATCAGCCTTTTGGAAGAAAAGGAGATGACACACCCATTTACTTGGCACTGGTTTGAGCTGGAATACAAACTCTATCAATCAGTGTCCGCAACAGCTGCATTTGACAAGTCCCTGTCCGCCAGGCTTAAGCCCTCCAACTATCTGTGGAGACTCCTCCCCGTCTGCCACCTCACTCCTTGCCCAGCCACGCACTGCGGCCTCACCCCCTGCTTCCTGCTGTTGTGTTTGCTCAAAGGCGAGCTCGCCTCATCATTTAAGCCCTCTCAGTCTGAAATGGTAATGCATGACTCGTCGAGGAACCTTTTTTGTTTACAAGGAAAACAAAGCACGTTCGTTGGTGTTTTCTCAAACAGCGAATGTTTTGCTCTGCCTCAGTCCAAACAGCCGAGTAATCTCAAGCTTTCACAACCTGTTGAAGGGGCTTGCCCCTGTGGAAATGCAACAGATGTTCCCTTGACATCCATCTGGTCCTCGTGATCCAGTGCTGTGCCACACTGTGAAAGGTTTTTCTTTTTTAACAGTTTCAGCTTGTCCCCAGTCAGGGGGCCGATCTCCCGTGTCTTATGCATGACCGGGATACAGTGCCACCGGTGACTTTACTCAAAGCCCCGGGATTAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205962 lncRNA downstream 27406 5198058 ~ 5200646 (-) True G181380
TU205967 lncRNA downstream 84927 5145963 ~ 5146172 (-) True G181385
TU205913 lncRNA downstream 210672 5020192 ~ 5020427 (-) True G181331
TU205912 lncRNA downstream 210924 5019960 ~ 5020175 (-) True G181330
TU205879 lncRNA downstream 250051 4967014 ~ 4981048 (-) True G181309
TU207090 lncRNA upstream 147812 5381956 ~ 5382630 (-) True G182348
TU207105 lncRNA upstream 163679 5397823 ~ 5398031 (-) True G182363
TU207106 lncRNA upstream 163953 5398097 ~ 5398469 (-) True G182364
TU207107 lncRNA upstream 164905 5399049 ~ 5399774 (-) True G182365
TU207155 lncRNA upstream 260065 5494209 ~ 5495402 (-) True G182411
CI01000039_05204187_05205884.mRNA mRNA downstream 25215 5203661 ~ 5205884 (-) False CI01000039_05204187_05205884
CI01000039_05012573_05014491.mRNA mRNA downstream 216276 5012505 ~ 5014823 (-) True CI01000039_05012573_05014491
CI01000039_04917173_04926003.mRNA mRNA downstream 304796 4916312 ~ 4926303 (-) True CI01000039_04917173_04926003
CI01000039_04824285_04826474.mRNA mRNA downstream 404625 4824124 ~ 4826474 (-) True CI01000039_04824285_04826474
CI01000039_04652941_04726975.mRNA mRNA downstream 504124 4652941 ~ 4726975 (-) True CI01000039_04652941_04726975
CI01000039_05298355_05313755.mRNA mRNA upstream 64057 5298201 ~ 5313788 (-) True CI01000039_05298355_05313755
CI01000039_05327866_05343471.mRNA mRNA upstream 92464 5326608 ~ 5343471 (-) True CI01000039_05327866_05343471
CI01000039_05428966_05446948.mRNA mRNA upstream 193788 5427932 ~ 5446948 (-) True CI01000039_05428966_05446948
CI01000039_05564105_05568438.mRNA mRNA upstream 328828 5562972 ~ 5568720 (-) True CI01000039_05564105_05568438
CI01000039_05691143_05694780.mRNA mRNA upstream 455974 5690118 ~ 5695149 (-) True CI01000039_05691143_05694780
TU205518 other downstream 740040 4490458 ~ 4491059 (-) True CI01000039_04478095_04490812
TU205490 other downstream 841570 4384866 ~ 4389529 (-) True G180953
TU205375 other downstream 988695 4240367 ~ 4242404 (-) False CI01000039_04240525_04242132
TU205376 other downstream 988695 4240367 ~ 4242404 (-) True CI01000039_04240525_04242132
TU204778 other downstream 2873492 2357204 ~ 2357607 (-) True G180346
TU207128 other upstream 222347 5456491 ~ 5469288 (-) True G182384
TU207224 other upstream 401914 5636058 ~ 5636764 (-) False G182470
TU207225 other upstream 402103 5636247 ~ 5636600 (-) True G182470
TU207563 other upstream 1273811 6507955 ~ 6508433 (-) True G182771
TU207627 other upstream 1400403 6634547 ~ 6635200 (-) True G182827

Expression Profile