RNA id: CI01000039_06517676_06525898.mRNA



Basic Information


Item Value
RNA id CI01000039_06517676_06525898.mRNA
length 1003
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000039_06517676_06525898
representative True

Chromosome Information


Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 6517526 ~ 6525947 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAATAAAAGTAAGCTTCAACACTGACCGCACAGTGAAAACGGCTTCTATCAGAAGACAGGATAGGGCGGTTCAGACATCTGGAGGACATCATCGCTCTAAAGCTCCTGTTGCTGCCCTTTACGATGTAAAAACAGCAGTACTTCACAAGAATGATTGTTCTCGTCGTACTGATTTTCGGATGCGATTCATTTCTGCAGTGGATTTGGGATTTCATGTATGAGGAACGTCATGTGCTCCTCATGTCACCCCACTGGAGCGTGTGCGCAGCTTTCAGCACTCATCTAATCTTCTCTGCTCCCTTCATGCTTCTGGATGTGTTCAGTACACACGTCGAATGGATTCATAAATATAGGATACGCCGTGAAGTCGTTGGCTTGCAGCAGTGGTTTCGATGTGCTTCTCGAATTTTATGGAAATACATGGTTGGCGTTTTACCGTTAACTGCGCTGTTTCTGTCAATACGGCACATGAATTTCCCAGAAAGAGCACCGTCTTCATTCCATGCATTCAGGGAATGTGTCTCATGCATGCTCATGTTCGATACGCTGTTCTTCATGTTTCATTACACCATTCACAAAATTCCCTGGCTGTACCACAGTGTCCACCGCATTCACCATCTGAACAGAGACACTTTTGCTCTGGCAGCTCAAGACTCCAGTATTTCTGAACTTCTGTTTCTACAAACCCTTGCATTTATCAGTGCCATGCTGGTGGGCTGCCACCCTTTTAGTGAAATCCTTTTCCATCTGGTTAACACCTGGATGGCAGTGGAGGACCATTGTGGATATGACTTTCCTTGGGCACTGCATCGGTTGCTGCCATTTTTTGGTGGGGCGCCACACCACCTGGCCCACCATCAGCACTTTAAAGGGAACTTCGCCCCCTACTTCAGACACTGGGATTACATCTTTGGGACCTTATTGCCCATTCCAGTAAATGAAGGAGACATTTAATAAGGTGAATCCAGGTTAATTGGGCCATTATATGACAGTGAGATTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU206413 lncRNA upstream 9023 6507892 ~ 6508503 (+) True G181770
TU206411 lncRNA upstream 11979 6505204 ~ 6505547 (+) True G181768
TU206405 lncRNA upstream 48956 6468342 ~ 6468570 (+) True G181762
TU206398 lncRNA upstream 82037 6435281 ~ 6435489 (+) True G181755
TU206397 lncRNA upstream 88112 6429140 ~ 6429414 (+) True G181754
TU206425 lncRNA downstream 5413 6531360 ~ 6531560 (+) True G181781
TU206426 lncRNA downstream 5911 6531858 ~ 6532130 (+) True G181782
TU206430 lncRNA downstream 8733 6534680 ~ 6534922 (+) True G181786
TU206431 lncRNA downstream 9118 6535065 ~ 6535439 (+) True G181787
TU206432 lncRNA downstream 9499 6535446 ~ 6535787 (+) True G181788
CI01000039_06472455_06491979.mRNA mRNA upstream 25064 6472455 ~ 6492462 (+) True CI01000039_06472455_06491979
CI01000039_06436994_06439467.mRNA mRNA upstream 77922 6436994 ~ 6439604 (+) True CI01000039_06436994_06439467
CI01000039_06313617_06317466.mRNA mRNA upstream 198781 6313433 ~ 6318745 (+) True CI01000039_06313617_06317466
CI01000039_06288292_06297288.mRNA mRNA upstream 220080 6288162 ~ 6297446 (+) True CI01000039_06288292_06297288
CI01000039_06282705_06284628.mRNA mRNA upstream 232595 6281904 ~ 6284931 (+) True CI01000039_06282705_06284628
CI01000039_06584621_06616401.mRNA mRNA downstream 58674 6584621 ~ 6616401 (+) True CI01000039_06584621_06616401
CI01000039_06677303_06686187.mRNA mRNA downstream 151356 6677303 ~ 6686864 (+) True CI01000039_06677303_06686187
CI01000039_06729386_06739661.mRNA mRNA downstream 203439 6729386 ~ 6740315 (+) True CI01000039_06729386_06739661
CI01000039_06744598_06746185.mRNA mRNA downstream 218651 6744598 ~ 6746534 (+) True CI01000039_06744598_06746185
CI01000039_06808952_06821780.mRNA mRNA downstream 283005 6808952 ~ 6821971 (+) True CI01000039_06808952_06821780
TU205651 other upstream 1668963 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182
TU204575 other upstream 2292869 4223579 ~ 4223779 (+) True G180162
TU204574 other upstream 2292869 4223593 ~ 4223779 (+) True G180162
TU204573 other upstream 2292919 4223579 ~ 4223779 (+) False G180162
TU206652 other downstream 794737 7320684 ~ 7323274 (+) True G181961
TU206748 other downstream 1369929 7895876 ~ 7895913 (+) True G182040

Expression Profile