RNA id: CI01000039_07006878_07015672.mRNA



Basic Information


Item Value
RNA id CI01000039_07006878_07015672.mRNA
length 1791
RNA type mRNA
GC content 0.37
exon number 5
gene id CI01000039_07006878_07015672
representative True

Chromosome Information


Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7006309 ~ 7016273 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACCCTGCCAATGCATTTTGAGCTCAGACAAAGACTCTTAAATTTGGTTATGAATGCTGTTATTAATTAAATTAATATGCTTGTGCTTTTATAAATAACATTTTGTTATTCCGATATTTTAAAAATAAAGCAATAGCAGTATTGGAAGATACTTTGAAACTGGAGAATGCAGTTTAGTTAAACTGCAGTCAAGCTGCCTTTCTGAAAAAAAGTTTGCTACAAACAAAGAGTAGCTAGCTTGCTAGTTATTTGAGGGAGAAAAAAGAAGAAAAAATATTTAAATTATATGTCAGACTATATCATTTGTTTAGAAAATCAGGAGGATGGCTTAAAATTGATAAAAATAATACAAATGTTCACAAAACATCCACATTTATATGATGCTGCCTGAAACAGTGATAATTTTTATATAATGTAAACTGTAAAAATGTTATTGTAAAATCTGTAGTGCTGTTTCTTGTGGTTATTTACCCATTGAGTAATACAGTATAGTTTTGCAATATTGCTATCATCATCATCATCATTAGGCATTTGTAACAAAATGAACAGGTTCTGTAAAGCTGGTTAAATTGTTGTTTTTTTGGAGGTAAGAAAATCCTGCAATGGCTAAAGTCATTGTTTCAGGGCTGAACAGATCAGCTGCTGATTTGACAGGAAGTGATGAAGTCTTTTCTTCAGAGTTGAGGAGGTTTGTGTCTGGGAAGGGCTTGGTGATCTACCCTGAGATCGGTGACAAACTAGACATTATCTGCCCCAAAGGGGACATTGGGAGACCGTATGAGTTTTATAAACTCTACCTGGTGAGGAAAGAGCAGGCAGAGTCCTGCAGCACCATACTGGACCCCAATGTTCTGGTGACCTGCAACAAACCAGAGAAAGACATCAAATTCACCATCAAGTTCCAAGAGTTCAGTCCAAACTACATGGGACTGGAATTCAAACGCTTCACAAACTATTACATCACCTTGGTTTTTGCTGTCTGGTCATCTTGTTTTCACTGGTCATTCGAGTTAATAACTCAGCGAGAGACTTTAGAGCGTGACAGTTTCACACGCATCCATTTGATTCTCAGCAAAAGCCTCTTCTACAATGTGTGCTATTGGTGTGTCACATTTACATTGTTTACATACAAGCTCAACACTCACCATATCGTCATCCCACCCGCGTCGTACCCTAAAACGGCCCCTTTAATCCATTTTAGGAAGAACTGTCGAGCTCTTTGATTCTCTCTTTATAGTTCAGCTGCACCCTCCATTTCATCTGAATTTAAATCTTTCAGGACATGTTATAGTATAAATCTAAATTTAGAGATTTAATTTATTTCGAATGATCGTCTCATCTAGAAGGCTACACACGTCCAGGATTCTCAAGTCGATATGTAGACAGTGTAGTCCCTACAGAGGTTCAGAGCACTGGCTCCAGAGGCCAACCCGGCGTCTTGAAATCTCCTTGCTCCTTTCCTTTATCCATGTAACTATTTGTCAAATCGTCTCCAGTCTGTCTGCAGAGGTTCTTTGAAGCAGGCCGGGTCTGCGCTCGCGTATCTCTGTCTCAGTCTCCGAGTTGTACGTGTTAACTTTATCCTGTCAGGCTGTGCCGCAACGTTTAGCTTAAGCACTCCAGTCAGTTTTGTGTTGTTCTCTAAAAATGTTTTTTAATCATTATTTTTGTCTTGTTTTCCAGTAAAATTATCTAAACATCCTTTAAAAACATAAAGTTTGCAAAAGGGTGTAAAGTTATAAGACTTTACATTCATTTTTTTCCATTACCACATTGGCATTTTTAAAATAAA

Function


GO: NA

KEGG:

id description
K05463 EFNB; ephrin-B

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207803 lncRNA downstream 10849 6988223 ~ 6995460 (-) True G182993
TU207759 lncRNA downstream 86250 6919843 ~ 6920059 (-) True G182950
TU207747 lncRNA downstream 182167 6823919 ~ 6824142 (-) True G182938
TU207682 lncRNA downstream 243878 6762207 ~ 6762431 (-) True G182878
TU207676 lncRNA downstream 258795 6747312 ~ 6747514 (-) True G182872
TU207836 lncRNA upstream 25860 7042133 ~ 7042344 (-) True G183026
TU207838 lncRNA upstream 29372 7045645 ~ 7045931 (-) True G183028
TU207845 lncRNA upstream 39972 7056245 ~ 7056458 (-) True G183035
TU207850 lncRNA upstream 55988 7072261 ~ 7073019 (-) False G183039
TU207849 lncRNA upstream 56506 7072779 ~ 7073019 (-) True G183039
CI01000039_06990836_06994541.mRNA mRNA downstream 11394 6990086 ~ 6994915 (-) True CI01000039_06990836_06994541
CI01000039_06833672_06856433.mRNA mRNA downstream 149579 6833590 ~ 6856730 (-) True CI01000039_06833672_06856433
CI01000039_06702521_06707733.mRNA mRNA downstream 298576 6701606 ~ 6707733 (-) True CI01000039_06702521_06707733
CI01000039_06647926_06651530.mRNA mRNA downstream 352860 6646710 ~ 6653449 (-) False CI01000039_06647926_06651530
CI01000039_06561801_06580642.mRNA mRNA downstream 425546 6560357 ~ 6580763 (-) True CI01000039_06561801_06580642
CI01000039_07134422_07137732.mRNA mRNA upstream 118149 7134422 ~ 7137732 (-) False CI01000039_07134422_07137732
CI01000039_07141149_07162368.mRNA mRNA upstream 124690 7140963 ~ 7162368 (-) True CI01000039_07141149_07162368
CI01000039_07165860_07166458.mRNA mRNA upstream 148510 7164783 ~ 7166458 (-) True CI01000039_07165860_07166458
CI01000039_07320926_07323244.mRNA mRNA upstream 304444 7320717 ~ 7324653 (-) True CI01000039_07320926_07323244
CI01000039_07385848_07389331.mRNA mRNA upstream 368556 7384829 ~ 7390490 (-) True CI01000039_07385848_07389331
TU207638 other downstream 357733 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 371109 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 497876 6507955 ~ 6508433 (-) True G182771
TU207224 other downstream 1369545 5636058 ~ 5636764 (-) False G182470
TU207766 other upstream 117834 7134107 ~ 7134198 (-) True G182956
TU208115 other upstream 955843 7972116 ~ 7975045 (-) True G183261

Expression Profile