RNA id: CI01000039_07394034_07396192.mRNA


Basic Information

Item Value
RNA id CI01000039_07394034_07396192.mRNA
length 2154
RNA type mRNA
GC content 0.46
exon number 3
gene id CI01000039_07394034_07396192
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7392793 ~ 7396259 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAAAAAAAACCTAAAAAAAAAAAAAAACATTCGCTTAACGAATGAATTTCTGTGTAGTCGTCTTAATTTATGAGATTCAAATTACAGTTGCGTCTAACAGCCTGTAAGTTTAAGCCATTTATATAGCAAAAATATAGTGCCAATAAACGCAAAAACAAAGCGTTCGGCTAATTCAAACATATAACTAGTCAATAGCTTTACACAATTTATAAAATAGAAATAAAAATCGAATTCTTGATGATGCAAAATGTAAAGTGAATGTAAATTATTTTACGAACAAACATGGACAAGCATTCAATATAAGCATTTAATTTATTTACATTATAAATAATATATATATTAAGGAACGATTTCTGCCTCCTGAAATTAGTTTTTAGGAGAATTTTTACATTTTTGACTTAAGTAGCCTACACTTTTAACCTATCGCCTAATTCGCAGCGTTTCAAAGACATTTATGTAAAATGTTTCACTCAATCAATTAATTTAGCTACGGTTCCTAAAACCACTACTTATAGAGAATATTAGGCTATTAAAAACCTAAAAAACGCGGAATTTTGGGGCATCTTTCACTGCATTTTTTGCCCCGAGCGCTGGTAATCTTCTGACCATATGGAGACAATTTGCGACATTTCGGTAGGCTATATCTTAAGAGTTTTTATTTTGTAATCGTTTTCAAAGTTTAAAATAAATATAATTTTCTTTACTGTCATACCACGTGTTAAGATACACGTCAAAGGTGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCCCCTTGATTAGCTGCTCTGTCTCTTATTTCTCATAGTGTCCCGCTCCTGTCCGGTCTTGCCCAAGGGACACGCGCCTTAACCAACGCCAAAACTCTGCCCAAGAGTCTAAAACTTTTGTTTATAATAGTAAATTTACTTTTACTATTTCCTCACACTAAAAGACTACTCTCTTTGATATTCTTTAACACAGCTAAACTTGGGCAAGAGTGTAAGCTTGTTCTACACCGAGAAGCGGGAAAACATCTACAGGTGTTTGGAGCCGCGAGACTAAAGGAGCACCGCACGCGCCAGGCGCGAGCATAGACACGCGGCCGTCAGGGGCAGAGCGCGACCCCCGACCAGTAAAAAAAAGCGTCACAGAAGAAAAAAGAGAGTGAGAGAGAGGGAGGGGGAGAGAGAGCAATAGAGAGAGTGTACGAGAGACGCGGCCGTCCCAAGAATGATGTCCTACATAAAGCAACCCCATTATGCTGTGAACGGGTTAACACTGTCCGCCTCAGGAATGGACCTGCTCCACACCGCCGTCGGCTACCCAGCCACTCCGAGGAAGCAGCGTCGGGAGCGCACTACCTTCACACGCACCCAACTGGACATTCTGGAAGCCCTGTTCACCAAAACACGCTACCCAGACATATTCATGAGAGAAGAGGTGGCTCTGAAAATCAACCTTCCCGAGTCCAGAGTTCAGGTGTGGTTTAAGAACCGTCGTGCTAAATGCCGCCAACAGCAACAGCAGACCAGCGGTCAGCCCAAGCCCCGTCCCCCCAAAAAGAAGTCCTCCCCACCCCCTGAGCTGACATCTGACCCTGGCGCCAGCTCCTCGGTGGCGGCTGCCCCAGCCCAGGCAGTGCCCCCTAGTGCCAGCGCAGGCACAGCACCCGTTTCTGTGTGGAGTCCCACTTCTCTATCCCCCCTTCCCGATCCATTGTGTGGCTCCGGCACGCCCTGCGTGCAGCGCCCCGCTCCATATCCCATGAGCTACGGTCAGCCCTCCACCTATAGCCAGGGCTACAGCTCCTCTCCTTACTTCAGTGGGTTGGATTGCAGCCCGTACCTCTCTCCCATGACCACTCAGCTGTCTGCGAGTGGGGGCGCCCTCTCTCCCCTCACCGTGCCCTCCATGGGCGGCTCGCTCAGCCAGTCACCCTCCCTCTCCTCCCAAGGATACAGCACCTCCTCGCTGGGTTTCAGTTCCGTAGATTGCCTGGACTACAAGGACCAGCAGGCCTGGAAGCTCAACTTCAGCACCGTGGACTGCCTCGACCATAAATTCCAGGTGCTGTAGAAGAGAAAGTGAGCGAGTGAAGAAAAAAAGCAAGAGGGAAGGAGAATAAGGAGAAGACGCATGAAGA

Function

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206704 lncRNA upstream 8484 7383566 ~ 7384309 (+) True G182004
TU206698 lncRNA upstream 42588 7349972 ~ 7350205 (+) True G182000
TU206697 lncRNA upstream 45591 7346805 ~ 7347202 (+) True G181999
TU206696 lncRNA upstream 46026 7346505 ~ 7346767 (+) True G181998
TU206695 lncRNA upstream 47295 7345261 ~ 7345498 (+) True G181997
TU206715 lncRNA downstream 3907 7400166 ~ 7400397 (+) True G182014
TU206658 lncRNA downstream 4322 7400581 ~ 7402300 (+) True G181962
TU206775 lncRNA downstream 85379 7481638 ~ 7482002 (+) True G182067
TU206771 lncRNA downstream 88836 7485095 ~ 7485424 (+) True G182063
TU206762 lncRNA downstream 113333 7509592 ~ 7511146 (+) True G182054
CI01000039_07362633_07380267.mRNA mRNA upstream 12294 7362232 ~ 7380499 (+) True CI01000039_07362633_07380267
CI01000039_07332093_07361302.mRNA mRNA upstream 31467 7329603 ~ 7361326 (+) True CI01000039_07332093_07361302
CI01000039_07324920_07329407.mRNA mRNA upstream 63321 7324681 ~ 7329472 (+) False CI01000039_07324920_07329407
CI01000039_07299805_07316808.mRNA mRNA upstream 74818 7299805 ~ 7317975 (+) True CI01000039_07299805_07316808
CI01000039_07268272_07278840.mRNA mRNA upstream 113894 7268169 ~ 7278899 (+) True CI01000039_07268272_07278840
CI01000039_07412923_07415375.mRNA mRNA downstream 16462 7412721 ~ 7415525 (+) True CI01000039_07412923_07415375
CI01000039_07425682_07427826.mRNA mRNA downstream 29423 7425682 ~ 7427957 (+) True CI01000039_07425682_07427826
CI01000039_07442137_07446489.mRNA mRNA downstream 45333 7441592 ~ 7447160 (+) True CI01000039_07442137_07446489
CI01000039_07460749_07461491.mRNA mRNA downstream 64338 7460597 ~ 7462025 (+) True CI01000039_07460749_07461491
CI01000039_07463037_07464915.mRNA mRNA downstream 66778 7463037 ~ 7465201 (+) True CI01000039_07463037_07464915
TU206652 other upstream 68096 7320684 ~ 7323274 (+) True G181961
TU205651 other upstream 2544230 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182
TU204575 other upstream 3168136 4223579 ~ 4223779 (+) True G180162
TU206748 other downstream 499617 7895876 ~ 7895913 (+) True G182040

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059181 True 2381 mRNA 0.47 3 NC_007116.7 36932718 ~ 36936443 (+)