RNA id: CI01000039_07450597_07454594.mRNA


Basic Information

Item Value
RNA id CI01000039_07450597_07454594.mRNA
length 1437
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000039_07450597_07454594
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7449808 ~ 7454630 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTCACCTGTCTTTCTCACCGCTTTCTTTTAGAAAATGGCAGAATCCGACTACCTGGACTACACCTGCCCACTCTGCACAGACTCCCAGCGAGACCCCGTCACCATCCCGTGTGGAGACACCTTCTGTCTGGAGTGCATTAAGATCTACTGGGACCATTCTGACCACCTCGGCGTTTATAGCTGCCCGCAGTGCCAGGCGACCTTCACTCCTCGGCCCATACTCAGACGTAACGCACCCCATAAAATCTTGGTGGTGACTCAGACAGAGGTTCAGCACATTATCCAGGATCGAATGAAAGAACTTCAAGAACTCAGACACAATGTGGATGTTCTCAAGGGAAATGCACAGCGGGCACAGACTGACAGTGATAAAATCTTCAGCGAGATGTTACAGGCGGTAGAGCGGTGGCATGCTGAGATAAGCCAGCTCATACAAGCCAACTTACAGGCCTCCATGGCTCAGAATTTTCCCACTCTGTCAGTTGCACCGGAGCCCATGGTGCCCAAAGTGCTGATAAACCCAGAGTTTTCCTTCAGTGAGATCACCAAAACCGTCTCTGACATGAAAGAACACCTGGACGACATCTGCAAAAAAGAGCTGGGAAACATCTCCAAACGAGGTAACCACGAAGATTATAATGTTTAATCACCGAGAGGCTAAGAAAAAGACATGGGACCTCTTTTGACTTTTGTAATATCTACATCTAAAATCCACAAAATAATAATAACTATTAAGTAGAGGTGGAAAGCATTGATCTGCATCAGACACAGACAAGAGCAAACAAAATGTTATCCGCTCACCAAGACTGCATTTTTTAATATCAAATACTGTAAAAACAGTAATATTGTTATATTATTATATACCTGTAATTTAAAATAACTGTTTTCTATTTTAATTTGGTGAAAACTAGTGCTGACAGATGCAGAGAGGAGTAACACACTGATCCGAGAAAACTCAAAAAACGTGTCTGTCGGCATTGGTCGGTGCAGTGTGAATTGGCCTTAAAATTGAATTTATTCTCCATCAGAAATCATTCTAATATGCTGATTTTGTGCTCAAAAAACAGTTGCAGCTGCTTAATATTTTTGTGAAAACCATTATACATTTTTTTAAAGATTCTTTGATTAATAGAAAGTTTAAAAGAACAGCATTTATATGAAATAGAAATCTTTTGTAACATTATGTCTTTACTCTTACTTGTGATCAATTTAATGTGTCCTTATAAAAATGTACAATATTAATAATAAAAAAAAAATTAAAAAAGTCAACTCGACTTTTGATCATAGTGTACATAATGCTATATTTTATCTACTATTAATTTTGCATGATTTTTCAGTGAGTGACACTTCAGTCTATGTCCTGATTCCGCGGTCTGGAGGACGTTTGAATGGTAAGAGCACTTGAGGTTCTACATTTCTGTTTATTTAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207948 lncRNA downstream 21167 7427024 ~ 7428641 (-) True G183121
TU207808 lncRNA downstream 87659 7360936 ~ 7362149 (-) True G182998
TU207807 lncRNA downstream 92988 7354970 ~ 7356820 (-) True G182997
TU207933 lncRNA downstream 101067 7348437 ~ 7348741 (-) True G183106
TU207930 lncRNA downstream 106843 7342676 ~ 7342965 (-) True G183103
TU207964 lncRNA upstream 8491 7463121 ~ 7465190 (-) True G183135
TU207969 lncRNA upstream 27003 7481633 ~ 7481993 (-) True G183140
TU207971 lncRNA upstream 29947 7484577 ~ 7484808 (-) True G183142
TU207972 lncRNA upstream 30489 7485119 ~ 7485485 (-) True G183143
TU207979 lncRNA upstream 41135 7495765 ~ 7496011 (-) True G183150
CI01000039_07401817_07402410.mRNA mRNA downstream 47169 7400571 ~ 7402639 (-) True CI01000039_07401817_07402410
CI01000039_07385848_07389331.mRNA mRNA downstream 59318 7384829 ~ 7390490 (-) True CI01000039_07385848_07389331
CI01000039_07320926_07323244.mRNA mRNA downstream 125155 7320717 ~ 7324653 (-) True CI01000039_07320926_07323244
CI01000039_07165860_07166458.mRNA mRNA downstream 283350 7164783 ~ 7166458 (-) True CI01000039_07165860_07166458
CI01000039_07141149_07162368.mRNA mRNA downstream 287440 7140963 ~ 7162368 (-) True CI01000039_07141149_07162368
CI01000039_07498583_07505779.mRNA mRNA upstream 43873 7498503 ~ 7506602 (-) True CI01000039_07498583_07505779
CI01000039_07523213_07573865.mRNA mRNA upstream 68567 7523197 ~ 7576151 (-) True CI01000039_07523213_07573865
CI01000039_07592640_07593317.mRNA mRNA upstream 137918 7592548 ~ 7595053 (-) True CI01000039_07592640_07593317
CI01000039_07619613_07632295.mRNA mRNA upstream 164250 7618880 ~ 7632295 (-) True CI01000039_07619613_07632295
CI01000039_07658015_07658757.mRNA mRNA upstream 202910 7657540 ~ 7659052 (-) True CI01000039_07658015_07658757
TU207766 other downstream 312041 7134107 ~ 7134198 (-) True G182956
TU207638 other downstream 801232 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 814608 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 941375 6507955 ~ 6508433 (-) True G182771
TU207225 other downstream 1813208 5636247 ~ 5636600 (-) True G182470
TU208115 other upstream 517486 7972116 ~ 7975045 (-) True G183261

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060674 True 645 mRNA 0.51 2 NC_007116.7 37045674 ~ 37047166 (-)