RNA id: CI01000039_07952703_07961286.mRNA


Basic Information

Item Value
RNA id CI01000039_07952703_07961286.mRNA
length 2347
RNA type mRNA
GC content 0.41
exon number 7
gene id CI01000039_07952703_07961286
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7952286 ~ 7962019 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAATGGAATAAACAAAAGATGTTTCGACATCACCTTCTGTTGTAAGTGCAAATGAAAAAACTGGACAAAATTGGCACAAAAGACCATTTACAAGACAAAAAGCTTAATTTAAATAAACAATCCCCCCCATCCGCCTCTGATCGGCACTCAGGGGTGCTGGCTCCATACTGGTAGACCACAAGTCCAGGGACAGTTGGTATCACATCACATGATTTTGGTTCATGTAAGGTAATGATTGTGCTGTCTCAATCAAGGAAAAACAAAACAAAAACAAATGTCAGTTATACAGGTGTGAAAACAAAAGCCCATCTGGTACTTTCCTCGTCACTGAGTTCTACTAACAGAGATCTACATTTGTATCTGATTTTTACGTTTTAAGAATTGACCAGAATGATCTTTCAGTTCACAGAACAAGAGGAAAGCGTTCATTCACACATGACGTAAAAATGCAAATATGTAAAATAAGTAAGAGTGGAAAACCTCTAGCAGTCAAGAAATGAAATATTTACTGAAAGAAAATACTGTAGTGTCACAGAATTTGACGGCTATGACTAGTTGACAGAGTTCTTCATGGTTCTTCATATTGTTTCTTGTCTAGTTCTAGTTGTAATTTTTAAATGAATGTGAAGAAAACATTCGGGTCAGTTGATTTTTCACCCATGTAATTTTACAAGATGAAGACAAGCTTCAAATGTTAAAATCAGCTGCTGATGAATCTTTGCACCTGAGACATGCAGAAACTCAAGTGCATATCTAGAAACTTCAAAAAGAGTTTTGAATATAATGTATTGATTCTGATTTCTTGTAAAGAGGACCCAAGAAATCCCCCTAAAGACCGGAGACTCAAGGGGTTCCAGCCTCATTCATCAGGCTATCAGGGACTCTTCTCTAATGGGACTGAAGGTGCTCGTCAACATCTCATAGTTCAGCTAAAGCATGTTCAGCAGTTTTGGGATCTGGGATCACCTTTAGGATTCCAGCATCAGATCAAGGATTACCATGCAGGATCAAATATTGTGGTCTCCTTATTTAAGAAGATGTTTCGGCGGTGTCTGACTCCTTTTTGCATCCTCATCCTGCTGTGTATGGTTTCTACATATAACTCTACTCCTCTTGGCCACAGAGGAGCGCTGTCCTTCAGCAATTCACTGCGCCTCACGCGCACTATTCGAGCCCGCGTCCAACAACTGATTTCCCAATACAAACAACAGGTGTTTGGTGGCGAGCTCTTTGAATACGGAGACCTGAAGCTGAGCACACTACCCGCAGTTACTGTCACTTATCAGACCTGGCTACACATGCAGGACACTGAGCGTTTGCGTTTGGCCTCTCACTACCTCCAAACTTTCTGGACTCACCTGGAACGTCAAAGGCAGCAGTTTGAGAGAGAAAGAGATGCGACAAATGAAAGAAGAGAACAGAGAAGAGACAAACGAGGAAGGCCACAGCCCACCTTGAGCCAAAGTTTTGTGGGTCTGCAAATCGATCTGCGGGACCTGATGAGACAAGTCAACTCTCAGTTGAGGAGTATGACACAGGTGTCTGCATCTACAAAATCTCCACTTCTTCATCACCTACGCTCCACTTCATCTTCCAGTCCTACTCCCAGCATGCATCATTCCAGAGACAGCACCAAGAAGCTCCAGACCCCAAGTCCCACTGATAACTCTCGCAGCTCCGCACACTCCACTGTACAATCATCTCAGACCTTGAACTCCGCCGACAGAGGATTTATTTCAACAACGGAGAAGACCACTGTCGGCCTCTCGCAACCCACCCTGGCATCAACTGTGGAGACCCAGACGACAACAGCAGCAGCAGCGTCCCTTTGGATTCAGCATCTGAGAGGATATGTGATACTGAGAGATCTAGAACGGTACTTGAGCAGATTGGCAAGAGATTACACCGTGCTCCAAACTAAATACTGAAAAACATGCACAATCAAATCTAGAAAAACCTTAAAAAAGAAAAACCAAGTATTGGACAAACACAGAATTAGATTATAAAACACAACCAAGGAAATACATAATTGAATACACTAACATTCATATCCATAAACAACTTCATGTCACAGTTGCTGTTTACCTTGCTCATTGACTGCTGTTTTATTTATTAGAATAATTTATTACAATTTTTTATTTACTGATTGTTTACAAGTGACTGGACATATAATGTATTTTTTTTTTTTATCTACATTTCAGTATTTTATATTTAATGAGTATTTCCATGTATGTGATAAGTCAGGGGAGTGAGCACATGGCAGCTAGTGTAGGTTATCATGAGATTGCCTAAGCAGTGTTATTTGTCCAGCAAGTATTTTTATATTATACAATAATTGTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208176 lncRNA downstream 29339 7922737 ~ 7922947 (-) True G183319
TU208131 lncRNA downstream 31648 7919713 ~ 7920638 (-) True G183277
TU208172 lncRNA downstream 53453 7895793 ~ 7898833 (-) True G183316
TU208168 lncRNA downstream 57076 7894989 ~ 7895210 (-) True G183314
TU208165 lncRNA downstream 58871 7892964 ~ 7893415 (-) True G183311
TU208109 lncRNA upstream 37 7962056 ~ 7965383 (-) True G183255
TU208185 lncRNA upstream 13544 7975563 ~ 7977048 (-) True G183328
TU208104 lncRNA upstream 40459 8002478 ~ 8004484 (-) True G183250
TU208186 lncRNA upstream 46805 8008824 ~ 8009050 (-) True G183329
TU208130 lncRNA upstream 82012 8044031 ~ 8044365 (-) True G183276
CI01000039_07908291_07909766.mRNA mRNA downstream 41818 7907904 ~ 7910468 (-) True CI01000039_07908291_07909766
CI01000039_07781930_07783389.mRNA mRNA downstream 168592 7781890 ~ 7783694 (-) True CI01000039_07781930_07783389
CI01000039_07658015_07658757.mRNA mRNA downstream 293234 7657540 ~ 7659052 (-) True CI01000039_07658015_07658757
CI01000039_07619613_07632295.mRNA mRNA downstream 319991 7618880 ~ 7632295 (-) True CI01000039_07619613_07632295
CI01000039_07592640_07593317.mRNA mRNA downstream 357233 7592548 ~ 7595053 (-) True CI01000039_07592640_07593317
CI01000039_07987279_07996351.mRNA mRNA upstream 25193 7987212 ~ 7996921 (-) True CI01000039_07987279_07996351
CI01000039_08003424_08011297.mRNA mRNA upstream 41391 8003410 ~ 8012533 (-) False CI01000039_08003424_08011297
CI01000039_08022279_08026193.mRNA mRNA upstream 59880 8021899 ~ 8026193 (-) True CI01000039_08022279_08026193
CI01000039_08038068_08041738.mRNA mRNA upstream 74900 8036919 ~ 8041738 (-) True CI01000039_08038068_08041738
CI01000039_08062731_08064494.mRNA mRNA upstream 100574 8062593 ~ 8064494 (-) True CI01000039_08062731_08064494
TU207766 other downstream 814519 7134107 ~ 7134198 (-) True G182956
TU207638 other downstream 1303710 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 1317086 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 1443853 6507955 ~ 6508433 (-) True G182771
TU207225 other downstream 2315686 5636247 ~ 5636600 (-) True G182470
TU208115 other upstream 10097 7972116 ~ 7975045 (-) True G183261

Expression Profile