RNA id: TU204772


Basic Information

Item Value
RNA id TU204772
length 365
lncRNA type intronic
GC content 0.57
exon number 1
gene id G180340
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 2380302 ~ 2380666 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGGCGAGGATTGGCGAGCTGGCGTTTCAAGAAAGCTTGGTTGTTTGACCAGGAGAGCCTATGTTGCCTCCAACGGGAGCAGTTCATGGCGCCGGGCGGACGGGCCCTACTGGCTGACAATTGAGGAGTAGCCGAAATTTGGAACGACCGATCGGGAGGGCTCTTGCAACATCCAGTGTTAGACCAAGGTTTACAGCATCGGGCGGGTAAAGCCCTACAGGCTGATAAATGAGGAGCAGCATGGGTCCTATTGGCCGACGGTGGGGTGAAAGATATTTGGAACGCCTGGCCAGGAGAGCTCTCGTGGCGTCTAACAGGAGACCAAGGCTCACAGTATGGGACGGGTAAGCCTTGGCGGACGGGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204779 lncRNA downstream 18161 2361862 ~ 2362141 (-) True G180347
TU204758 lncRNA downstream 41359 2336417 ~ 2338943 (-) True G180326
TU203748 lncRNA downstream 100343 2279701 ~ 2279959 (-) True G179445
TU203593 lncRNA downstream 241189 2138737 ~ 2139113 (-) True G179301
TU203486 lncRNA downstream 307516 2017006 ~ 2072786 (-) True G179204
TU204784 lncRNA upstream 6664 2387330 ~ 2400257 (-) True G180351
TU204771 lncRNA upstream 200978 2581644 ~ 2582037 (-) True G180339
TU204760 lncRNA upstream 205881 2586547 ~ 2588266 (-) True G180328
TU204831 lncRNA upstream 207664 2588330 ~ 2588671 (-) True G180396
TU204832 lncRNA upstream 208124 2588790 ~ 2589023 (-) True G180397
CI01000039_02237032_02271442.mRNA mRNA downstream 108860 2236942 ~ 2271442 (-) True CI01000039_02237032_02271442
CI01000039_02144352_02144513.mRNA mRNA downstream 234742 2144219 ~ 2145560 (-) True CI01000039_02144352_02144513
CI01000039_01942473_01943188.mRNA mRNA downstream 436892 1942433 ~ 1943410 (-) False CI01000039_01942473_01943188
CI01000039_01721603_01723199.mRNA mRNA downstream 656759 1721317 ~ 1723543 (-) False CI01000039_01721603_01723199
CI01000039_01622940_01669780.mRNA mRNA downstream 710249 1622940 ~ 1670053 (-) True CI01000039_01622940_01669780
CI01000039_02425743_02427761.mRNA mRNA upstream 44740 2425406 ~ 2427761 (-) True CI01000039_02425743_02427761
CI01000039_02428934_02448342.mRNA mRNA upstream 48178 2428844 ~ 2448372 (-) True CI01000039_02428934_02448342
CI01000039_02451198_02486009.mRNA mRNA upstream 70526 2451192 ~ 2486009 (-) True CI01000039_02451198_02486009
CI01000039_02497017_02533586.mRNA mRNA upstream 114801 2495467 ~ 2533613 (-) True CI01000039_02497017_02533586
CI01000039_02555748_02566361.mRNA mRNA upstream 175057 2555723 ~ 2566361 (-) True CI01000039_02555748_02566361
TU204778 other downstream 22695 2357204 ~ 2357607 (-) True G180346
TU205375 other upstream 1859701 4240367 ~ 4242404 (-) False CI01000039_04240525_04242132
TU205376 other upstream 1859701 4240367 ~ 4242404 (-) True CI01000039_04240525_04242132
TU205490 other upstream 2004200 4384866 ~ 4389529 (-) True G180953
TU205518 other upstream 2109792 4490458 ~ 4491059 (-) True CI01000039_04478095_04490812
TU207128 other upstream 3075825 5456491 ~ 5469288 (-) True G182384

Expression Profile