RNA id: TU204561


Basic Information

Item Value
RNA id TU204561
length 611
RNA type TUCP
GC content 0.58
exon number 1
gene id G180156
representative False

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4090998 ~ 4091608 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTTTCTCCAAATCATGTCGTTTGATTCCCCTGAGGGGTTTACCCACTGCTATGGAGACCGCTGAACTGATGTTTAATCACGTGTTCAGATACTTCGGAATCCCCGAGGACATCGTCTCTGACAGGGGACCCCAATTCACCTCACGGGTGTGGAAGGCCTTCTTCTCGCTCCTAGGTGTGGCCGTCAGTCTCTCATCGGGCTACCATCCCCAATCGAACGGGCAGACGGAGAGGAAGATCCAGGAGATCGGCCGCTTCCTCCGTACCTTCTGTCACGGCCACCAGAACTCTTGGAGCCAGTACCTGGGTTGGGCCGAGTACGCGCAAAACTCCCTGCGTCAGCCATCTACTGGACTCACCCCTTTTCAGTGCGTACTCGGTTTCCAACCCCCTCTGTTCCCCTGGACCGGGGAACCATCGGACGTTCCAGCGGTGGATTACTGGTTCCGAGAGAGCGAGAGGGTCTGGGACTCAGCTCACCACCAACTACAGCGGGCCCTGCGCAGACGCAGGATGACAGCCGACCTTCGTCGGTCCAAGACTCCCTCCTACCAACCGGGACAGAAGGTCTGGCTGTCAACTCGGGACATCAGACTGCGTCTGCCCTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204557 lncRNA upstream 1772 4088971 ~ 4089226 (+) True G180155
TU204545 lncRNA upstream 19426 4070588 ~ 4071572 (+) True G180146
TU204543 lncRNA upstream 19426 4070588 ~ 4071572 (+) False G180146
TU204535 lncRNA upstream 24345 4065669 ~ 4066653 (+) False CI01000039_04065787_04066284
TU204544 lncRNA upstream 28037 4062028 ~ 4062961 (+) False CI01000039_04062068_04062375
TU204562 lncRNA downstream 880 4092488 ~ 4092835 (+) True G180157
TU204565 lncRNA downstream 33940 4125548 ~ 4125931 (+) True G180160
TU204602 lncRNA downstream 37646 4129254 ~ 4129494 (+) True G180185
TU204605 lncRNA downstream 42153 4133761 ~ 4134014 (+) True G180188
TU204582 lncRNA downstream 42775 4134383 ~ 4135372 (+) True G180165
CI01000039_04078795_04079273.mRNA mRNA upstream 11725 4078795 ~ 4079273 (+) False CI01000039_04078795_04079273
CI01000039_04070151_04075216.mRNA mRNA upstream 15637 4070151 ~ 4075361 (+) False CI01000039_04070151_04075216
CI01000039_04065787_04066284.mRNA mRNA upstream 24367 4065713 ~ 4066631 (+) False CI01000039_04065787_04066284
CI01000039_04062068_04062375.mRNA mRNA upstream 28060 4062003 ~ 4062938 (+) False CI01000039_04062068_04062375
CI01000039_04058417_04059141.mRNA mRNA upstream 31495 4058343 ~ 4059503 (+) False CI01000039_04058417_04059141
CI01000039_04108687_04120437.mRNA mRNA downstream 17079 4108687 ~ 4120437 (+) True CI01000039_04108687_04120437
CI01000039_04198172_04200073.mRNA mRNA downstream 105638 4197246 ~ 4200160 (+) True CI01000039_04198172_04200073
CI01000039_04223888_04224220.mRNA mRNA downstream 132280 4223888 ~ 4224636 (+) False CI01000039_04223888_04224220
CI01000039_04244908_04247540.mRNA mRNA downstream 152896 4244504 ~ 4247540 (+) True CI01000039_04244908_04247540
CI01000039_04295776_04307914.mRNA mRNA downstream 204168 4295776 ~ 4307914 (+) True CI01000039_04295776_04307914
TU204548 other upstream 11435 4079419 ~ 4079563 (+) True G180149
TU204549 other upstream 11435 4079419 ~ 4079563 (+) True G180149
TU204550 other upstream 11435 4079419 ~ 4079563 (+) True G180149
TU204364 other upstream 41026 4048293 ~ 4049972 (+) True CI01000039_04048342_04049635
TU204263 other upstream 665443 3424037 ~ 3425555 (+) True G179903
TU204573 other downstream 131971 4223579 ~ 4223779 (+) False G180162
TU204575 other downstream 131971 4223579 ~ 4223779 (+) True G180162
TU204572 other downstream 131985 4223593 ~ 4223779 (+) False G180162
TU204574 other downstream 131985 4223593 ~ 4223779 (+) True G180162
TU205651 other downstream 752574 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182

Expression Profile