RNA id: TU204582


Basic Information

Item Value
RNA id TU204582
length 990
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G180165
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4134383 ~ 4135372 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAAAACTCAGGGGGCAGCGTTTATGATCGCTTAACAGCATGGAGACAACAGACTTGTGAAAAGACGGGTAAAGGTGACAGATGAAGGCAATTAAACAGTTTTTCAACACTTCCTGCTGGAGTACTGAGGACGCAGACCTAAAGGTGAGTGTGTCGACCGGTGACTATGAACTACAGGATGGCAGCTGCTCTTCCTTTCAGATGAATAGACCCATGTGGTGGACCTTCCACAGGTGTGATAATCTTTCAAGATTTGGAAAGAATTTCTGCAGGAGAATCTTTCAGATACACAAATAAATCGAACAATTTTGAACATCTGAAGTTGATAATGTAGATAAAGAAACAGATATGGAAAACTTTTTTTTTTTTTTTAACAGTTTCTGTAAATTGTTTTGGGATATGTAATTTTAGTTCTCTAAAAATATGCTGACAATGTTTCTGAAAAGAATGTTTAATCTTTAGATAAACCAAACAATAGATCATTGAAAATGTCAGAAATAGTAGATGTGAATGTTTCAGTTGATTTCCAAAGTGAAAGTGTTTCATCAGTCATGCCCTCTAGACAGGATATCATCGTATACTGTAAGTTCATTATTGAGACACTACAGTATAGATGATGTACTACCCAGGGGGGTCAATGAGCTTCTAAAAGTTTCCTGGACCCACAAACACTGTGACAGAGAGTGGCGATAAAACCGTTACCATTACTGAGTTTAGTAATGGTAAGGGTTCTGTTGCCTTCTCTCAAAAATCATCTGGATATGAGAGGACAAAGCACATGTCAAGTGAGGAAGAGAACTTCAAAGCAATGGATGATGCAGTCAAAAGTGAAAGGATGGATAAAAAGACCAGAACAACAAACATTAAATGGATTAAATCAACTAACAATGCAATTCTGATCATTTTTAATCTATACAACTATATAGCCTATAATGTGTTACATGAGACTGTCGTGTGTAATTTCAATAAATATCACTGAACAATGAATTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204605 lncRNA upstream 369 4133761 ~ 4134014 (+) True G180188
TU204602 lncRNA upstream 4889 4129254 ~ 4129494 (+) True G180185
TU204565 lncRNA upstream 8452 4125548 ~ 4125931 (+) True G180160
TU204562 lncRNA upstream 41548 4092488 ~ 4092835 (+) True G180157
TU204560 lncRNA upstream 42775 4091102 ~ 4091608 (+) True G180156
TU204590 lncRNA downstream 79586 4214958 ~ 4215578 (+) True G180173
TU204600 lncRNA downstream 80598 4215970 ~ 4216186 (+) True G180183
TU204608 lncRNA downstream 83776 4219148 ~ 4219847 (+) True G180191
TU204597 lncRNA downstream 87106 4222478 ~ 4222726 (+) True G180180
TU204612 lncRNA downstream 103908 4239280 ~ 4239507 (+) True G180195
CI01000039_04108687_04120437.mRNA mRNA upstream 13946 4108687 ~ 4120437 (+) True CI01000039_04108687_04120437
CI01000039_04078795_04079273.mRNA mRNA upstream 55110 4078795 ~ 4079273 (+) False CI01000039_04078795_04079273
CI01000039_04070151_04075216.mRNA mRNA upstream 59022 4070151 ~ 4075361 (+) False CI01000039_04070151_04075216
CI01000039_04065787_04066284.mRNA mRNA upstream 67752 4065713 ~ 4066631 (+) False CI01000039_04065787_04066284
CI01000039_04062068_04062375.mRNA mRNA upstream 71445 4062003 ~ 4062938 (+) False CI01000039_04062068_04062375
CI01000039_04198172_04200073.mRNA mRNA downstream 61874 4197246 ~ 4200160 (+) True CI01000039_04198172_04200073
CI01000039_04223888_04224220.mRNA mRNA downstream 88516 4223888 ~ 4224636 (+) False CI01000039_04223888_04224220
CI01000039_04244908_04247540.mRNA mRNA downstream 109132 4244504 ~ 4247540 (+) True CI01000039_04244908_04247540
CI01000039_04295776_04307914.mRNA mRNA downstream 160404 4295776 ~ 4307914 (+) True CI01000039_04295776_04307914
CI01000039_04364813_04366029.mRNA mRNA downstream 228797 4364169 ~ 4366231 (+) True CI01000039_04364813_04366029
TU204561 other upstream 42775 4090998 ~ 4091608 (+) False G180156
TU204559 other upstream 42861 4090998 ~ 4091522 (+) False G180156
TU204548 other upstream 54820 4079419 ~ 4079563 (+) True G180149
TU204573 other downstream 88207 4223579 ~ 4223779 (+) False G180162
TU204575 other downstream 88207 4223579 ~ 4223779 (+) True G180162
TU204572 other downstream 88221 4223593 ~ 4223779 (+) False G180162
TU204574 other downstream 88221 4223593 ~ 4223779 (+) True G180162
TU205651 other downstream 708810 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060823 False 741 mRNA 0.38 1 NC_007116.7 42271810 ~ 42272550 (-)
eurasian perch (Perca fluviatilis) TU229495 False 464 lncRNA 0.47 2 NC_053127.1 27595831 ~ 27596545 (-)
striped catfish (Pangasianodon hypophthalmus) TU54606 False 1569 lncRNA 0.32 1 NC_047597.1 14286650 ~ 14288218 (+)
striped catfish (Pangasianodon hypophthalmus) TU453161 True 1124 lncRNA 0.38 2 NC_047621.1 6534116 ~ 6535434 (-)
bowfin (Amia calva) TU193199 False 497 lncRNA 0.42 2 CM030142.1 6435464 ~ 6436739 (+)
tiger barb (Puntius tetrazona) TU54606 True 1146 lncRNA 0.41 1 NC_056703.1 15813103 ~ 15814248 (+)