RNA id: TU204590


Basic Information

Item Value
RNA id TU204590
length 621
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G180173
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4214958 ~ 4215578 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAAAACATTAAATAATAGATAGCCTAATAGAAGCCTTGCCCTTGACAGTCAAAAAATGAATCAATAAGTTAAATTAATGATATAGAATACAATTATAAATTGATGGATGTACTAAAACATTTTAAATTAAATACACTTAATTACAAAATGTTATTATTTATAAATTTAACTATACAGAAAAAACAGCCCTACCAGAGAGCATTAAAGTAGGTCAGGTGTCTCAGAAACAAACGTCATAAGCTGATCTTTAAACACCATGGCAACTCCAACTGCTGAGTCCACATCTTTTCCGTAGACTACAGGAAATGGAAACACTCTCTCCACTTCCTGTTGCAGAACGGGGTTACAAGACAGAGCGCTGCCACTGCCAATAATACACCTCACCCCTGCAGCCTGCAAGCTCTGAGGGGGCATCATAGTGGCCATGTTTTCAATAATGCCCCTGCACACAGCCCGAGTCACGTGACCCAGAGAGAGGTTAGAGGGCGAGATATGTGAGACACTGGCACTGGTGGTGGGGTCATGCCGCTCTCCTAGTAGCGTTGAAGTCACGGTTAGGTCAGTATTGGGCTGTGCCAGGGCAGACTGGATCAGCTGGGAGTAGATTCTGGACTCGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204582 lncRNA upstream 79586 4134383 ~ 4135372 (+) True G180165
TU204605 lncRNA upstream 80944 4133761 ~ 4134014 (+) True G180188
TU204602 lncRNA upstream 85464 4129254 ~ 4129494 (+) True G180185
TU204565 lncRNA upstream 89027 4125548 ~ 4125931 (+) True G180160
TU204562 lncRNA upstream 122123 4092488 ~ 4092835 (+) True G180157
TU204600 lncRNA downstream 392 4215970 ~ 4216186 (+) True G180183
TU204608 lncRNA downstream 3570 4219148 ~ 4219847 (+) True G180191
TU204597 lncRNA downstream 6900 4222478 ~ 4222726 (+) True G180180
TU204612 lncRNA downstream 23702 4239280 ~ 4239507 (+) True G180195
TU204566 lncRNA downstream 24735 4240313 ~ 4242363 (+) False G180161
CI01000039_04198172_04200073.mRNA mRNA upstream 14798 4197246 ~ 4200160 (+) True CI01000039_04198172_04200073
CI01000039_04108687_04120437.mRNA mRNA upstream 94521 4108687 ~ 4120437 (+) True CI01000039_04108687_04120437
CI01000039_04078795_04079273.mRNA mRNA upstream 135685 4078795 ~ 4079273 (+) False CI01000039_04078795_04079273
CI01000039_04070151_04075216.mRNA mRNA upstream 139597 4070151 ~ 4075361 (+) False CI01000039_04070151_04075216
CI01000039_04065787_04066284.mRNA mRNA upstream 148327 4065713 ~ 4066631 (+) False CI01000039_04065787_04066284
CI01000039_04223888_04224220.mRNA mRNA downstream 8310 4223888 ~ 4224636 (+) False CI01000039_04223888_04224220
CI01000039_04244908_04247540.mRNA mRNA downstream 28926 4244504 ~ 4247540 (+) True CI01000039_04244908_04247540
CI01000039_04295776_04307914.mRNA mRNA downstream 80198 4295776 ~ 4307914 (+) True CI01000039_04295776_04307914
CI01000039_04364813_04366029.mRNA mRNA downstream 148591 4364169 ~ 4366231 (+) True CI01000039_04364813_04366029
CI01000039_04370566_04373090.mRNA mRNA downstream 154049 4369627 ~ 4373462 (+) True CI01000039_04370566_04373090
TU204561 other upstream 123350 4090998 ~ 4091608 (+) False G180156
TU204559 other upstream 123436 4090998 ~ 4091522 (+) False G180156
TU204548 other upstream 135395 4079419 ~ 4079563 (+) True G180149
TU204573 other downstream 8001 4223579 ~ 4223779 (+) False G180162
TU204575 other downstream 8001 4223579 ~ 4223779 (+) True G180162
TU204572 other downstream 8015 4223593 ~ 4223779 (+) False G180162
TU204574 other downstream 8015 4223593 ~ 4223779 (+) True G180162
TU205651 other downstream 628604 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182

Expression Profile