RNA id: TU204597


Basic Information

Item Value
RNA id TU204597
length 249
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G180180
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4222478 ~ 4222726 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGATATCAGAGTTTGTAGGGAAACTCCTACTGTCTGTCACCGTGTTGGACTGCGCCTCCAGCAGCACGACTTTAACTGATGTGGTGCCCAGATCCATGCCGAGAACAAAGTCGGCAGAACAACTGAGTGATGTCGCCATTACCTCTAAAGAAATCACTACTTTTGTGCAGTCAGAGCAAAATGTGCAGTATATGTCATTGCACACGAAAATAAACTGCTCTCTAGTTGTCCACGACAAGATCTAGCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204608 lncRNA upstream 2631 4219148 ~ 4219847 (+) True G180191
TU204600 lncRNA upstream 6292 4215970 ~ 4216186 (+) True G180183
TU204590 lncRNA upstream 6900 4214958 ~ 4215578 (+) True G180173
TU204582 lncRNA upstream 87106 4134383 ~ 4135372 (+) True G180165
TU204605 lncRNA upstream 88464 4133761 ~ 4134014 (+) True G180188
TU204612 lncRNA downstream 16554 4239280 ~ 4239507 (+) True G180195
TU204566 lncRNA downstream 17587 4240313 ~ 4242363 (+) False G180161
TU204567 lncRNA downstream 17587 4240313 ~ 4242363 (+) False G180161
TU204568 lncRNA downstream 17587 4240313 ~ 4242363 (+) False G180161
TU204569 lncRNA downstream 17587 4240313 ~ 4242363 (+) False G180161
CI01000039_04198172_04200073.mRNA mRNA upstream 22318 4197246 ~ 4200160 (+) True CI01000039_04198172_04200073
CI01000039_04108687_04120437.mRNA mRNA upstream 102041 4108687 ~ 4120437 (+) True CI01000039_04108687_04120437
CI01000039_04078795_04079273.mRNA mRNA upstream 143205 4078795 ~ 4079273 (+) False CI01000039_04078795_04079273
CI01000039_04070151_04075216.mRNA mRNA upstream 147117 4070151 ~ 4075361 (+) False CI01000039_04070151_04075216
CI01000039_04065787_04066284.mRNA mRNA upstream 155847 4065713 ~ 4066631 (+) False CI01000039_04065787_04066284
CI01000039_04223888_04224220.mRNA mRNA downstream 1162 4223888 ~ 4224636 (+) False CI01000039_04223888_04224220
CI01000039_04244908_04247540.mRNA mRNA downstream 21778 4244504 ~ 4247540 (+) True CI01000039_04244908_04247540
CI01000039_04295776_04307914.mRNA mRNA downstream 73050 4295776 ~ 4307914 (+) True CI01000039_04295776_04307914
CI01000039_04364813_04366029.mRNA mRNA downstream 141443 4364169 ~ 4366231 (+) True CI01000039_04364813_04366029
CI01000039_04370566_04373090.mRNA mRNA downstream 146901 4369627 ~ 4373462 (+) True CI01000039_04370566_04373090
TU204561 other upstream 130870 4090998 ~ 4091608 (+) False G180156
TU204559 other upstream 130956 4090998 ~ 4091522 (+) False G180156
TU204548 other upstream 142915 4079419 ~ 4079563 (+) True G180149
TU204573 other downstream 853 4223579 ~ 4223779 (+) False G180162
TU204575 other downstream 853 4223579 ~ 4223779 (+) True G180162
TU204572 other downstream 867 4223593 ~ 4223779 (+) False G180162
TU204574 other downstream 867 4223593 ~ 4223779 (+) True G180162
TU205651 other downstream 621456 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182

Expression Profile