RNA id: TU204612


Basic Information

Item Value
RNA id TU204612
length 228
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G180195
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4239280 ~ 4239507 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCCACCTACTGGCGGGTTTAATTTCACATTTAAAGTGTCTTTTCATTTTTTAAATAATTTCAAATAACATTATTTAATGTTTTATATTTTCAACATTTCAAAACTTTATTTATGCATCTGTAACTACTCTTGACTGATTTAATCTAGTTATATAGTTATACATTAGACTACAATGTCTGTACCTGAAAATCTCCTGTTTAAGCCTACATAAAAACCTGAAAAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204597 lncRNA upstream 16554 4222478 ~ 4222726 (+) True G180180
TU204608 lncRNA upstream 19433 4219148 ~ 4219847 (+) True G180191
TU204600 lncRNA upstream 23094 4215970 ~ 4216186 (+) True G180183
TU204590 lncRNA upstream 23702 4214958 ~ 4215578 (+) True G180173
TU204582 lncRNA upstream 103908 4134383 ~ 4135372 (+) True G180165
TU204566 lncRNA downstream 806 4240313 ~ 4242363 (+) False G180161
TU204567 lncRNA downstream 806 4240313 ~ 4242363 (+) False G180161
TU204568 lncRNA downstream 806 4240313 ~ 4242363 (+) False G180161
TU204569 lncRNA downstream 806 4240313 ~ 4242363 (+) False G180161
TU204571 lncRNA downstream 806 4240313 ~ 4242363 (+) True G180161
CI01000039_04223888_04224220.mRNA mRNA upstream 14644 4223888 ~ 4224636 (+) False CI01000039_04223888_04224220
CI01000039_04198172_04200073.mRNA mRNA upstream 39120 4197246 ~ 4200160 (+) True CI01000039_04198172_04200073
CI01000039_04108687_04120437.mRNA mRNA upstream 118843 4108687 ~ 4120437 (+) True CI01000039_04108687_04120437
CI01000039_04078795_04079273.mRNA mRNA upstream 160007 4078795 ~ 4079273 (+) False CI01000039_04078795_04079273
CI01000039_04070151_04075216.mRNA mRNA upstream 163919 4070151 ~ 4075361 (+) False CI01000039_04070151_04075216
CI01000039_04244908_04247540.mRNA mRNA downstream 4997 4244504 ~ 4247540 (+) True CI01000039_04244908_04247540
CI01000039_04295776_04307914.mRNA mRNA downstream 56269 4295776 ~ 4307914 (+) True CI01000039_04295776_04307914
CI01000039_04364813_04366029.mRNA mRNA downstream 124662 4364169 ~ 4366231 (+) True CI01000039_04364813_04366029
CI01000039_04370566_04373090.mRNA mRNA downstream 130120 4369627 ~ 4373462 (+) True CI01000039_04370566_04373090
CI01000039_04384983_04394003.mRNA mRNA downstream 145313 4384820 ~ 4394124 (+) True CI01000039_04384983_04394003
TU204575 other upstream 14623 4223579 ~ 4223779 (+) True G180162
TU204574 other upstream 14623 4223593 ~ 4223779 (+) True G180162
TU204573 other upstream 14673 4223579 ~ 4223779 (+) False G180162
TU204572 other upstream 14673 4223593 ~ 4223779 (+) False G180162
TU204561 other upstream 147672 4090998 ~ 4091608 (+) False G180156
TU205651 other downstream 604675 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182
TU206652 other downstream 3081177 7320684 ~ 7323274 (+) True G181961
TU206748 other downstream 3656369 7895876 ~ 7895913 (+) True G182040

Expression Profile