RNA id: TU206405


Basic Information

Item Value
RNA id TU206405
length 229
lncRNA type antisense_over
GC content 0.34
exon number 1
gene id G181762
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 6468342 ~ 6468570 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTGAACTGCACGTTGATCACGGATACCCTGTGCACATGAACTGTTTCTGCTGACATTTCTGAACTGCTGATCAATCATTAGTCCCAAAACTATGTCATATGTGGATCTTTTGGTAAACAGATGGATGAATGTTGCAAAATAATTTCTGTAGAGTAGAATCGCTATATTTAGTGATTTCATAATCCATCCTTTTTAATACTTCATTGTAAGCACAGATCTTAAAATTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206398 lncRNA upstream 32853 6435281 ~ 6435489 (+) True G181755
TU206397 lncRNA upstream 38928 6429140 ~ 6429414 (+) True G181754
TU206396 lncRNA upstream 39236 6428614 ~ 6429106 (+) True G181753
TU206384 lncRNA upstream 43924 6423559 ~ 6424418 (+) False G181751
TU206411 lncRNA downstream 36634 6505204 ~ 6505547 (+) True G181768
TU206413 lncRNA downstream 39322 6507892 ~ 6508503 (+) True G181770
TU206425 lncRNA downstream 62790 6531360 ~ 6531560 (+) True G181781
TU206426 lncRNA downstream 63288 6531858 ~ 6532130 (+) True G181782
TU206430 lncRNA downstream 66110 6534680 ~ 6534922 (+) True G181786
CI01000039_06436994_06439467.mRNA mRNA upstream 28738 6436994 ~ 6439604 (+) True CI01000039_06436994_06439467
CI01000039_06313617_06317466.mRNA mRNA upstream 149597 6313433 ~ 6318745 (+) True CI01000039_06313617_06317466
CI01000039_06288292_06297288.mRNA mRNA upstream 170896 6288162 ~ 6297446 (+) True CI01000039_06288292_06297288
CI01000039_06282705_06284628.mRNA mRNA upstream 183411 6281904 ~ 6284931 (+) True CI01000039_06282705_06284628
CI01000039_06251772_06253349.mRNA mRNA upstream 214884 6251582 ~ 6253458 (+) True CI01000039_06251772_06253349
CI01000039_06472455_06491979.mRNA mRNA downstream 3885 6472455 ~ 6492462 (+) True CI01000039_06472455_06491979
CI01000039_06517676_06525898.mRNA mRNA downstream 48956 6517526 ~ 6525947 (+) True CI01000039_06517676_06525898
CI01000039_06584621_06616401.mRNA mRNA downstream 116051 6584621 ~ 6616401 (+) True CI01000039_06584621_06616401
CI01000039_06677303_06686187.mRNA mRNA downstream 208733 6677303 ~ 6686864 (+) True CI01000039_06677303_06686187
CI01000039_06729386_06739661.mRNA mRNA downstream 260816 6729386 ~ 6740315 (+) True CI01000039_06729386_06739661
TU205651 other upstream 1619779 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182
TU204575 other upstream 2243685 4223579 ~ 4223779 (+) True G180162
TU204574 other upstream 2243685 4223593 ~ 4223779 (+) True G180162
TU204573 other upstream 2243735 4223579 ~ 4223779 (+) False G180162
TU206652 other downstream 852114 7320684 ~ 7323274 (+) True G181961
TU206748 other downstream 1427306 7895876 ~ 7895913 (+) True G182040

Expression Profile