RNA id: TU206411


Basic Information

Item Value
RNA id TU206411
length 344
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G181768
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 6505204 ~ 6505547 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCGCTGCTGCCAATCATTGACCGTTTTTTTAATGACATTTTTTAAAGTGAAGGTATTTGACAGGAAATATCTGTAAAATAACAGTGTTTTGCGGTTTATTTAAATTAGAATATTTTACTTTAATTCTACAGGGTTTTTTGGCTTCCATTCATTTGACCGTTTTATCATTTAACTGTTTTGTTACTGTTTAATTACTGATTATTTTTGTAATTTTACATACATTTGTTTGTAATTTAAGAAAACAGAAAAAATACTGTATAAAAATACAGTAAATTTTCTGTGAAAAATATGTGAATTACTGTAATTTTTCATTAATGTCATAATACTTACAATAACAGCCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206405 lncRNA upstream 36634 6468342 ~ 6468570 (+) True G181762
TU206398 lncRNA upstream 69715 6435281 ~ 6435489 (+) True G181755
TU206397 lncRNA upstream 75790 6429140 ~ 6429414 (+) True G181754
TU206396 lncRNA upstream 76098 6428614 ~ 6429106 (+) True G181753
TU206387 lncRNA upstream 80786 6423638 ~ 6424418 (+) False G181751
TU206413 lncRNA downstream 2345 6507892 ~ 6508503 (+) True G181770
TU206425 lncRNA downstream 25813 6531360 ~ 6531560 (+) True G181781
TU206426 lncRNA downstream 26311 6531858 ~ 6532130 (+) True G181782
TU206430 lncRNA downstream 29133 6534680 ~ 6534922 (+) True G181786
TU206431 lncRNA downstream 29518 6535065 ~ 6535439 (+) True G181787
CI01000039_06472455_06491979.mRNA mRNA upstream 12742 6472455 ~ 6492462 (+) True CI01000039_06472455_06491979
CI01000039_06436994_06439467.mRNA mRNA upstream 65600 6436994 ~ 6439604 (+) True CI01000039_06436994_06439467
CI01000039_06313617_06317466.mRNA mRNA upstream 186459 6313433 ~ 6318745 (+) True CI01000039_06313617_06317466
CI01000039_06288292_06297288.mRNA mRNA upstream 207758 6288162 ~ 6297446 (+) True CI01000039_06288292_06297288
CI01000039_06282705_06284628.mRNA mRNA upstream 220273 6281904 ~ 6284931 (+) True CI01000039_06282705_06284628
CI01000039_06517676_06525898.mRNA mRNA downstream 11979 6517526 ~ 6525947 (+) True CI01000039_06517676_06525898
CI01000039_06584621_06616401.mRNA mRNA downstream 79074 6584621 ~ 6616401 (+) True CI01000039_06584621_06616401
CI01000039_06677303_06686187.mRNA mRNA downstream 171756 6677303 ~ 6686864 (+) True CI01000039_06677303_06686187
CI01000039_06729386_06739661.mRNA mRNA downstream 223839 6729386 ~ 6740315 (+) True CI01000039_06729386_06739661
CI01000039_06744598_06746185.mRNA mRNA downstream 239051 6744598 ~ 6746534 (+) True CI01000039_06744598_06746185
TU205651 other upstream 1656641 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182
TU204575 other upstream 2280547 4223579 ~ 4223779 (+) True G180162
TU204574 other upstream 2280547 4223593 ~ 4223779 (+) True G180162
TU204573 other upstream 2280597 4223579 ~ 4223779 (+) False G180162
TU206652 other downstream 815137 7320684 ~ 7323274 (+) True G181961
TU206748 other downstream 1390329 7895876 ~ 7895913 (+) True G182040

Expression Profile