RNA id: TU207619


Basic Information

Item Value
RNA id TU207619
length 364
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G182819
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 6626649 ~ 6627012 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATCACATCTCTTCGTTGATCCCGAGACTTGAAGCTGCCTTCTACCTGCAAGCAGCTGGAATTCGCTGCTGATCAGCTCGCCGCTCTGCAGCAGCAAGATCAGCTTGCCTCTCCTCTGCTTGCCACTCTCAACTCGCCGCTCTCAAGCAGCCCACCACTCACAAGCAGCCCACCGCTCACAAGCAGCAAATTTCCTGCGGCATTGTTTCAAATGTCGCGCCATGGCTGTGGCACGTGCAGAGCCCCTTTGCATGCTGATGACGGGCACAGCGAGTGCGTGCGATGTCTGGGGAAATCCCACGCAGAAGCCGCGCTCACTGAAACGACCTGCTCTCATTGTAAGAATATAAGTCTGGCCTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207618 lncRNA downstream 450 6625909 ~ 6626199 (-) True G182818
TU207617 lncRNA downstream 1733 6624527 ~ 6624916 (-) True G182817
TU207616 lncRNA downstream 2404 6624030 ~ 6624245 (-) True G182816
TU207615 lncRNA downstream 3185 6622891 ~ 6623464 (-) True G182815
TU207614 lncRNA downstream 3977 6622471 ~ 6622672 (-) True G182814
TU207620 lncRNA upstream 490 6627502 ~ 6627984 (-) True G182820
TU207621 lncRNA upstream 1348 6628360 ~ 6628840 (-) True G182821
TU207622 lncRNA upstream 1960 6628972 ~ 6629718 (-) True G182822
TU207623 lncRNA upstream 2720 6629732 ~ 6630410 (-) True G182823
TU207624 lncRNA upstream 3552 6630564 ~ 6630827 (-) True G182824
CI01000039_06561801_06580642.mRNA mRNA downstream 45886 6560357 ~ 6580763 (-) True CI01000039_06561801_06580642
CI01000039_06507869_06512333.mRNA mRNA downstream 114316 6507758 ~ 6512333 (-) True CI01000039_06507869_06512333
CI01000039_06444483_06468488.mRNA mRNA downstream 158161 6442364 ~ 6468488 (-) True CI01000039_06444483_06468488
CI01000039_06361313_06381595.mRNA mRNA downstream 244992 6360806 ~ 6381657 (-) True CI01000039_06361313_06381595
CI01000039_06347202_06354469.mRNA mRNA downstream 272180 6347024 ~ 6354469 (-) True CI01000039_06347202_06354469
CI01000039_06647926_06651530.mRNA mRNA upstream 19698 6646710 ~ 6653449 (-) False CI01000039_06647926_06651530
CI01000039_06702521_06707733.mRNA mRNA upstream 74594 6701606 ~ 6707733 (-) True CI01000039_06702521_06707733
CI01000039_06833672_06856433.mRNA mRNA upstream 206578 6833590 ~ 6856730 (-) True CI01000039_06833672_06856433
CI01000039_06990836_06994541.mRNA mRNA upstream 363074 6990086 ~ 6994915 (-) True CI01000039_06990836_06994541
CI01000039_07006878_07015672.mRNA mRNA upstream 379297 7006309 ~ 7016273 (-) True CI01000039_07006878_07015672
TU207563 other downstream 118216 6507955 ~ 6508433 (-) True G182771
TU207224 other downstream 989885 5636058 ~ 5636764 (-) False G182470
TU207225 other downstream 990049 5636247 ~ 5636600 (-) True G182470
TU207128 other downstream 1157361 5456491 ~ 5469288 (-) True G182384
TU205518 other downstream 2135590 4490458 ~ 4491059 (-) True CI01000039_04478095_04490812
TU207627 other upstream 7535 6634547 ~ 6635200 (-) True G182827
TU207638 other upstream 20515 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207766 other upstream 507095 7134107 ~ 7134198 (-) True G182956
TU208115 other upstream 1345104 7972116 ~ 7975045 (-) True G183261

Expression Profile