RNA id: TU207621


Basic Information

Item Value
RNA id TU207621
length 481
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G182821
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 6628360 ~ 6628840 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGATATATTAGGCAGCAAGTTGTCCTCAAAGTTGATGTGTTAGAATCAGGAAAAATGGGCAAGCGTAAGGATTTGAGTGAGTTTGACAAGGGACAAATTGTGATGGCTAGACGACTGGGTCAGAGCATCTCCAAAACTGCAGCTCTTGTGGGGTGTTCCTGGTCTGCAGTGGTCAGTATTAGGGATGCACTGATACCATTTTTAAGGACCGAGTATGAGTACCGATACTTTTTTTCTGGTACTCTTTTTCATCGCCGATTCCGATGCCTATACATTTATTAATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTGTTTTTTGGTGATGTTGCAGTTTTCCAAGCACAACAGTGAGACTAATGAATGTAGGACAGCTTCTTTATTATGACTCTAATGAAAAAGTAATAATTTTTATGTGCTTGTCACAAACTTAAAGAACAAAAATTTCACAGTGTCCAATAACCTTCAAAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207620 lncRNA downstream 376 6627502 ~ 6627984 (-) True G182820
TU207619 lncRNA downstream 1348 6626649 ~ 6627012 (-) True G182819
TU207618 lncRNA downstream 2161 6625909 ~ 6626199 (-) True G182818
TU207617 lncRNA downstream 3444 6624527 ~ 6624916 (-) True G182817
TU207616 lncRNA downstream 4115 6624030 ~ 6624245 (-) True G182816
TU207622 lncRNA upstream 132 6628972 ~ 6629718 (-) True G182822
TU207623 lncRNA upstream 892 6629732 ~ 6630410 (-) True G182823
TU207624 lncRNA upstream 1724 6630564 ~ 6630827 (-) True G182824
TU207625 lncRNA upstream 2445 6631285 ~ 6631744 (-) True G182825
TU207626 lncRNA upstream 4538 6633378 ~ 6633944 (-) True G182826
CI01000039_06561801_06580642.mRNA mRNA downstream 47597 6560357 ~ 6580763 (-) True CI01000039_06561801_06580642
CI01000039_06507869_06512333.mRNA mRNA downstream 116027 6507758 ~ 6512333 (-) True CI01000039_06507869_06512333
CI01000039_06444483_06468488.mRNA mRNA downstream 159872 6442364 ~ 6468488 (-) True CI01000039_06444483_06468488
CI01000039_06361313_06381595.mRNA mRNA downstream 246703 6360806 ~ 6381657 (-) True CI01000039_06361313_06381595
CI01000039_06347202_06354469.mRNA mRNA downstream 273891 6347024 ~ 6354469 (-) True CI01000039_06347202_06354469
CI01000039_06647926_06651530.mRNA mRNA upstream 17870 6646710 ~ 6653449 (-) False CI01000039_06647926_06651530
CI01000039_06702521_06707733.mRNA mRNA upstream 72766 6701606 ~ 6707733 (-) True CI01000039_06702521_06707733
CI01000039_06833672_06856433.mRNA mRNA upstream 204750 6833590 ~ 6856730 (-) True CI01000039_06833672_06856433
CI01000039_06990836_06994541.mRNA mRNA upstream 361246 6990086 ~ 6994915 (-) True CI01000039_06990836_06994541
CI01000039_07006878_07015672.mRNA mRNA upstream 377469 7006309 ~ 7016273 (-) True CI01000039_07006878_07015672
TU207563 other downstream 119927 6507955 ~ 6508433 (-) True G182771
TU207224 other downstream 991596 5636058 ~ 5636764 (-) False G182470
TU207225 other downstream 991760 5636247 ~ 5636600 (-) True G182470
TU207128 other downstream 1159072 5456491 ~ 5469288 (-) True G182384
TU205518 other downstream 2137301 4490458 ~ 4491059 (-) True CI01000039_04478095_04490812
TU207627 other upstream 5707 6634547 ~ 6635200 (-) True G182827
TU207638 other upstream 18687 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207766 other upstream 505267 7134107 ~ 7134198 (-) True G182956
TU208115 other upstream 1343276 7972116 ~ 7975045 (-) True G183261

Expression Profile