RNA id: TU207623


Basic Information

Item Value
RNA id TU207623
length 679
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G182823
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 6629732 ~ 6630410 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGGGTATAATCGTTTTATAAATAATAAACAACCATTACTTTTCGTGAAATACATGGAATTGCAGCAACACACAGACACAGTGGTGCAGTAATACTGATGTAATGAGGTCACAGGTGTATGTTTGTAGAGTAATTTAAAACAGCTTTGAACGCGGCTCAACCAATCAGAATTGTTGCATTTTAATTCATGATGGTGTTCACATAGTATGATCGACTTATTAGCCAACACAAAACTCATCTCACTCAAATTAGCAAACATGTACACAGTCTACTCAACCGCAACTTCTACTAGCGTTCTATTGCTGTTGATGTTCGCTAACATTGCAATTTGAATTTGTTATACATGCTGCTGCCACAGTACAAAAAAAACAGAAATTGCCGTAGCTCCGTTATGCGAATACAAAAGCCTATTTCACTTAAAAGAGTTCAACAAAGCTTGTCTTTGTATCCCTATGGCACGAACATTGCCTGCTTGCTGCTGCATACATGCAAAATTGCATATTAGCTAGCTGTCCCATTGACTTCCATTCATATGCATGCGGATGCATCAGACCAGAAATGAAAGCTTGTGCGAAAAGTTCCGCATTTCGCTGCATTCTAAAGTTGAAGTTTGGTGAACTCTGACCTGCGAATTTGCATAATGTGAAAACGTGCGACCAGTAGACGATCGATTCGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207622 lncRNA downstream 14 6628972 ~ 6629718 (-) True G182822
TU207621 lncRNA downstream 892 6628360 ~ 6628840 (-) True G182821
TU207620 lncRNA downstream 1748 6627502 ~ 6627984 (-) True G182820
TU207619 lncRNA downstream 2720 6626649 ~ 6627012 (-) True G182819
TU207618 lncRNA downstream 3533 6625909 ~ 6626199 (-) True G182818
TU207624 lncRNA upstream 154 6630564 ~ 6630827 (-) True G182824
TU207625 lncRNA upstream 875 6631285 ~ 6631744 (-) True G182825
TU207626 lncRNA upstream 2968 6633378 ~ 6633944 (-) True G182826
TU207630 lncRNA upstream 6516 6636926 ~ 6637173 (-) True G182829
TU207631 lncRNA upstream 7052 6637462 ~ 6637939 (-) True G182830
CI01000039_06561801_06580642.mRNA mRNA downstream 48969 6560357 ~ 6580763 (-) True CI01000039_06561801_06580642
CI01000039_06507869_06512333.mRNA mRNA downstream 117399 6507758 ~ 6512333 (-) True CI01000039_06507869_06512333
CI01000039_06444483_06468488.mRNA mRNA downstream 161244 6442364 ~ 6468488 (-) True CI01000039_06444483_06468488
CI01000039_06361313_06381595.mRNA mRNA downstream 248075 6360806 ~ 6381657 (-) True CI01000039_06361313_06381595
CI01000039_06347202_06354469.mRNA mRNA downstream 275263 6347024 ~ 6354469 (-) True CI01000039_06347202_06354469
CI01000039_06647926_06651530.mRNA mRNA upstream 16300 6646710 ~ 6653449 (-) False CI01000039_06647926_06651530
CI01000039_06702521_06707733.mRNA mRNA upstream 71196 6701606 ~ 6707733 (-) True CI01000039_06702521_06707733
CI01000039_06833672_06856433.mRNA mRNA upstream 203180 6833590 ~ 6856730 (-) True CI01000039_06833672_06856433
CI01000039_06990836_06994541.mRNA mRNA upstream 359676 6990086 ~ 6994915 (-) True CI01000039_06990836_06994541
CI01000039_07006878_07015672.mRNA mRNA upstream 375899 7006309 ~ 7016273 (-) True CI01000039_07006878_07015672
TU207563 other downstream 121299 6507955 ~ 6508433 (-) True G182771
TU207224 other downstream 992968 5636058 ~ 5636764 (-) False G182470
TU207225 other downstream 993132 5636247 ~ 5636600 (-) True G182470
TU207128 other downstream 1160444 5456491 ~ 5469288 (-) True G182384
TU205518 other downstream 2138673 4490458 ~ 4491059 (-) True CI01000039_04478095_04490812
TU207627 other upstream 4137 6634547 ~ 6635200 (-) True G182827
TU207638 other upstream 17117 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207766 other upstream 503697 7134107 ~ 7134198 (-) True G182956
TU208115 other upstream 1341706 7972116 ~ 7975045 (-) True G183261

Expression Profile