RNA id: TU207849


Basic Information

Item Value
RNA id TU207849
length 241
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G183039
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7072261 ~ 7073019 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCACAAGCCTATCCAAATGCTTTATGCTGAAAATCGCGATTCATGTCTGCTCACTTTAATAACTCCATAAACCCGTTTGCTTTATGAGACGAGCCCAAAAAGCTTATAATGAGTGACCATGGCAACACAGAATGAGTGCCGCGCGCTGTGTGAAACTGGCTATACAAGCATAAACAAAACACGACGCCTCCGTCGACTGTGTTAGTGTGTTTAGTTAAATTGCTGAAAAAAACGAGTGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207845 lncRNA downstream 16321 7056245 ~ 7056458 (-) True G183035
TU207838 lncRNA downstream 26848 7045645 ~ 7045931 (-) True G183028
TU207836 lncRNA downstream 30435 7042133 ~ 7042344 (-) True G183026
TU207782 lncRNA downstream 32271 7000748 ~ 7040508 (-) True G182972
TU207803 lncRNA downstream 77319 6988223 ~ 6995460 (-) True G182993
TU207852 lncRNA upstream 2261 7075280 ~ 7075559 (-) True G183041
TU207853 lncRNA upstream 2699 7075718 ~ 7075952 (-) True G183042
TU207854 lncRNA upstream 3475 7076494 ~ 7076715 (-) True G183043
TU207873 lncRNA upstream 49121 7122140 ~ 7124041 (-) True G183061
TU207880 lncRNA upstream 133771 7206790 ~ 7207004 (-) True G183068
CI01000039_07006878_07015672.mRNA mRNA downstream 56506 7006309 ~ 7016273 (-) True CI01000039_07006878_07015672
CI01000039_06990836_06994541.mRNA mRNA downstream 77864 6990086 ~ 6994915 (-) True CI01000039_06990836_06994541
CI01000039_06833672_06856433.mRNA mRNA downstream 216049 6833590 ~ 6856730 (-) True CI01000039_06833672_06856433
CI01000039_06702521_06707733.mRNA mRNA downstream 365046 6701606 ~ 6707733 (-) True CI01000039_06702521_06707733
CI01000039_06647926_06651530.mRNA mRNA downstream 419330 6646710 ~ 6653449 (-) False CI01000039_06647926_06651530
CI01000039_07134422_07137732.mRNA mRNA upstream 61403 7134422 ~ 7137732 (-) False CI01000039_07134422_07137732
CI01000039_07141149_07162368.mRNA mRNA upstream 67944 7140963 ~ 7162368 (-) True CI01000039_07141149_07162368
CI01000039_07165860_07166458.mRNA mRNA upstream 91764 7164783 ~ 7166458 (-) True CI01000039_07165860_07166458
CI01000039_07320926_07323244.mRNA mRNA upstream 247698 7320717 ~ 7324653 (-) True CI01000039_07320926_07323244
CI01000039_07385848_07389331.mRNA mRNA upstream 311810 7384829 ~ 7390490 (-) True CI01000039_07385848_07389331
TU207638 other downstream 424203 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 437579 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 564346 6507955 ~ 6508433 (-) True G182771
TU207224 other downstream 1436015 5636058 ~ 5636764 (-) False G182470
TU207766 other upstream 61088 7134107 ~ 7134198 (-) True G182956
TU208115 other upstream 899097 7972116 ~ 7975045 (-) True G183261

Expression Profile