RNA id: TU207917


Basic Information

Item Value
RNA id TU207917
length 1029
lncRNA type antisense_over
GC content 0.41
exon number 6
gene id G183091
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7295665 ~ 7308737 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTACATTATGGCATGCTTTAAATGCTGAATTTTCCATGTTTTAACTAAGCAGTAATGATACATTATTATATCATTTGTTAAATGGTTATTTAAAAATCACATTCAATCCTGCATTACTAATTCGGTTTGTTCCCCCCTTGTATATTTTTTATTAAAATGTTTTTATCACCAGCTGCCACTGACCTCTAGAGTGCAACGTTTGCTGGGATTAAGCACAAGAAACCTGCGCAGAATCCCCTCACAGTCTGTAGACATGTAGAAGGGTACACGGTACTTCCCCCTCAACACTCGCTCACGCAGCTCCTTGAGGTTCTGTCCATCAAAAGGAAGAGACCCGCTGACCAGCGTATACAGGATGACACCCAGGCTCCAAATGTCCACCTCTGGCCCATCATACTTTTTTCCTTGAAACAACTCTGGAGCTGCATATGGCGGGGAACCGCAGAAGGTGTCCAACTTATTCCCCAGCGTAAACTCATTACTAAAGCCAAAGTCTGCTATCTTTATGTTAGCATCTGCATCCAAAAGCAAATTCTCTGCCTTCAGATCTCTGTGAACTATATTCTTCTGATGACAGTAATGAACAGCTGACACAATCTGTCTGAATTTGGCTCTAGCCTCAATTTCTTTCATTCTCCCATGAGACACCAGGTAATCAAACACCTCACCTCCACTTGCATATTCCATTACAAGATAAAGCGTCTTCTCTGTTTCAATGACCTCAAAGAGTTGCACAATGTTGGGGTGACGGAGAGTCTTCATGATCCGCACTTCTCTGAACAGCTGCAAGAGAAAAGAGAAAGAAAGTAGGAAAGAGAGGGTGGTGTGATTCTTCAGTGATTATCAATAAAACAAAATGCCATTTAAATTCTGTTCCCCGAATTTACTGATATTCTTATCATCATCAACTTGAAGCCTTCAGGTATGACAGTAAAATCCAGATAGAATATATACTTCGGCATTTTGCTGTCTCTCATTATGAAGGGAGTACCCAATGTACCATTCCTGTTGCTGTGGAAGCCCCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207913 lncRNA downstream 5138 7295665 ~ 7300356 (-) False G183091
TU207793 lncRNA downstream 41854 7259341 ~ 7263640 (-) True G182983
TU207882 lncRNA downstream 94385 7210904 ~ 7211109 (-) True G183070
TU207881 lncRNA downstream 97194 7208089 ~ 7208300 (-) True G183069
TU207880 lncRNA downstream 98490 7206790 ~ 7207004 (-) True G183068
TU207927 lncRNA upstream 26901 7335638 ~ 7336127 (-) True G183100
TU207930 lncRNA upstream 33939 7342676 ~ 7342965 (-) True G183103
TU207933 lncRNA upstream 39700 7348437 ~ 7348741 (-) True G183106
TU207807 lncRNA upstream 46233 7354970 ~ 7356820 (-) True G182997
TU207808 lncRNA upstream 52199 7360936 ~ 7362149 (-) True G182998
CI01000039_07165860_07166458.mRNA mRNA downstream 139036 7164783 ~ 7166458 (-) True CI01000039_07165860_07166458
CI01000039_07141149_07162368.mRNA mRNA downstream 143126 7140963 ~ 7162368 (-) True CI01000039_07141149_07162368
CI01000039_07134422_07137732.mRNA mRNA downstream 167762 7134422 ~ 7137732 (-) False CI01000039_07134422_07137732
CI01000039_07006878_07015672.mRNA mRNA downstream 289221 7006309 ~ 7016273 (-) True CI01000039_07006878_07015672
CI01000039_06990836_06994541.mRNA mRNA downstream 310579 6990086 ~ 6994915 (-) True CI01000039_06990836_06994541
CI01000039_07320926_07323244.mRNA mRNA upstream 11980 7320717 ~ 7324653 (-) True CI01000039_07320926_07323244
CI01000039_07385848_07389331.mRNA mRNA upstream 76092 7384829 ~ 7390490 (-) True CI01000039_07385848_07389331
CI01000039_07401817_07402410.mRNA mRNA upstream 91834 7400571 ~ 7402639 (-) True CI01000039_07401817_07402410
CI01000039_07450597_07454594.mRNA mRNA upstream 141071 7449808 ~ 7454630 (-) True CI01000039_07450597_07454594
CI01000039_07498583_07505779.mRNA mRNA upstream 189766 7498503 ~ 7506602 (-) True CI01000039_07498583_07505779
TU207766 other downstream 167727 7134107 ~ 7134198 (-) True G182956
TU207638 other downstream 656918 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 670294 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 797061 6507955 ~ 6508433 (-) True G182771
TU207225 other downstream 1668894 5636247 ~ 5636600 (-) True G182470
TU208115 other upstream 663379 7972116 ~ 7975045 (-) True G183261

Expression Profile