RNA id: TU207927


Basic Information

Item Value
RNA id TU207927
length 490
lncRNA type intronic
GC content 0.34
exon number 1
gene id G183100
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7335638 ~ 7336127 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTTTAGACTAGAAAATACATATAAATTCAGTTTTTAAAAAATATCATTGTACATCCAAATGTGTTTTCTAACGTTTTTTGCACATTTTATAAAATCAATAACTCAAAGAGCAAAAAAACCTGTTTTATGCATAAATGACAAAAAAGTCCTTTTAGGGGACACATATTTTCTGTGTAGCTGGTACTATTGTTCAGTACTGGCAGGCAGTATAATAGCCTTTTTGCCTGTGTTTTAGGTTGATGATAGTAAGTTTTATAGAAGACAGAGAGGAAAAGCTGTACCTTTTCCCAAAAGTACTGATGATAGTGTTCGCAGTGCATCAGAAAATAAGGTTGTAAGAAAGGAAGAAGTTGAAGATCAAGGAGGATAGAAAAAGTGAGGGCAGAGATGAAGAATATAAGTCATAAATTCTTGTGAAAGTCAGGCATTTTGGTACATTATCCTATGCCAGTTTGGAAGATGTGATCCACACTACAACAAGAGGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207917 lncRNA downstream 26901 7305494 ~ 7308737 (-) True G183091
TU207913 lncRNA downstream 35282 7295665 ~ 7300356 (-) False G183091
TU207793 lncRNA downstream 71998 7259341 ~ 7263640 (-) True G182983
TU207882 lncRNA downstream 124529 7210904 ~ 7211109 (-) True G183070
TU207881 lncRNA downstream 127338 7208089 ~ 7208300 (-) True G183069
TU207930 lncRNA upstream 6549 7342676 ~ 7342965 (-) True G183103
TU207933 lncRNA upstream 12310 7348437 ~ 7348741 (-) True G183106
TU207807 lncRNA upstream 18843 7354970 ~ 7356820 (-) True G182997
TU207808 lncRNA upstream 24809 7360936 ~ 7362149 (-) True G182998
TU207948 lncRNA upstream 90897 7427024 ~ 7428641 (-) True G183121
CI01000039_07320926_07323244.mRNA mRNA downstream 10985 7320717 ~ 7324653 (-) True CI01000039_07320926_07323244
CI01000039_07165860_07166458.mRNA mRNA downstream 169180 7164783 ~ 7166458 (-) True CI01000039_07165860_07166458
CI01000039_07141149_07162368.mRNA mRNA downstream 173270 7140963 ~ 7162368 (-) True CI01000039_07141149_07162368
CI01000039_07134422_07137732.mRNA mRNA downstream 197906 7134422 ~ 7137732 (-) False CI01000039_07134422_07137732
CI01000039_07006878_07015672.mRNA mRNA downstream 319365 7006309 ~ 7016273 (-) True CI01000039_07006878_07015672
CI01000039_07385848_07389331.mRNA mRNA upstream 48702 7384829 ~ 7390490 (-) True CI01000039_07385848_07389331
CI01000039_07401817_07402410.mRNA mRNA upstream 64444 7400571 ~ 7402639 (-) True CI01000039_07401817_07402410
CI01000039_07450597_07454594.mRNA mRNA upstream 113681 7449808 ~ 7454630 (-) True CI01000039_07450597_07454594
CI01000039_07498583_07505779.mRNA mRNA upstream 162376 7498503 ~ 7506602 (-) True CI01000039_07498583_07505779
CI01000039_07523213_07573865.mRNA mRNA upstream 187070 7523197 ~ 7576151 (-) True CI01000039_07523213_07573865
TU207766 other downstream 197871 7134107 ~ 7134198 (-) True G182956
TU207638 other downstream 687062 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 700438 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 827205 6507955 ~ 6508433 (-) True G182771
TU207225 other downstream 1699038 5636247 ~ 5636600 (-) True G182470
TU208115 other upstream 635989 7972116 ~ 7975045 (-) True G183261

Expression Profile