RNA id: TU206689


Basic Information

Item Value
RNA id TU206689
length 289
lncRNA type intronic
GC content 0.39
exon number 1
gene id G181991
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7338771 ~ 7339059 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTCAGTCTTTTCTAGCAGATGGTTTTTACCTTTTTGGTCAATGTAAGGGACTTTTTCTTTTCACTCACTCACTGATGAAAACTTGTGTGCCAAAACACCTCAGTTTTGTGATTGACAAATGCATTTAGAAGAAAGTGTTGCTGGTTTACGTTGCATATGGTTTGCTACTTACATGCACCTTGTTTGATAGTGAAGCTGCACCAGAATAACTACTTGGAGATTTCACAAAACCATTCCAACCCATTCTCTTTCTTGCCCTTTTTCCCCTCGCATGTAGGCCTATCAATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206543 lncRNA upstream 265750 7072199 ~ 7073021 (+) False G181870
TU206544 lncRNA upstream 265750 7072790 ~ 7073021 (+) True G181870
TU206571 lncRNA upstream 370979 6967497 ~ 6967792 (+) True G181897
TU206562 lncRNA upstream 392385 6945502 ~ 6946386 (+) True G181888
TU206508 lncRNA upstream 423431 6915005 ~ 6915340 (+) True G181855
TU206690 lncRNA downstream 31 7339090 ~ 7339315 (+) True G181992
TU206693 lncRNA downstream 1927 7340986 ~ 7341316 (+) True G181995
TU206695 lncRNA downstream 6202 7345261 ~ 7345498 (+) True G181997
TU206696 lncRNA downstream 7446 7346505 ~ 7346767 (+) True G181998
TU206697 lncRNA downstream 7746 7346805 ~ 7347202 (+) True G181999
CI01000039_07324920_07329407.mRNA mRNA upstream 9299 7324681 ~ 7329472 (+) False CI01000039_07324920_07329407
CI01000039_07299805_07316808.mRNA mRNA upstream 20796 7299805 ~ 7317975 (+) True CI01000039_07299805_07316808
CI01000039_07268272_07278840.mRNA mRNA upstream 59872 7268169 ~ 7278899 (+) True CI01000039_07268272_07278840
CI01000039_07259359_07263181.mRNA mRNA upstream 75143 7259230 ~ 7263628 (+) True CI01000039_07259359_07263181
CI01000039_07236216_07240207.mRNA mRNA upstream 97557 7235981 ~ 7241214 (+) True CI01000039_07236216_07240207
CI01000039_07362633_07380267.mRNA mRNA downstream 23173 7362232 ~ 7380499 (+) True CI01000039_07362633_07380267
CI01000039_07394034_07396192.mRNA mRNA downstream 53734 7392793 ~ 7396259 (+) True CI01000039_07394034_07396192
CI01000039_07412923_07415375.mRNA mRNA downstream 73662 7412721 ~ 7415525 (+) True CI01000039_07412923_07415375
CI01000039_07425682_07427826.mRNA mRNA downstream 86623 7425682 ~ 7427957 (+) True CI01000039_07425682_07427826
CI01000039_07442137_07446489.mRNA mRNA downstream 102533 7441592 ~ 7447160 (+) True CI01000039_07442137_07446489
TU206652 other upstream 14074 7320684 ~ 7323274 (+) True G181961
TU205651 other upstream 2490208 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182
TU204575 other upstream 3114114 4223579 ~ 4223779 (+) True G180162
TU204574 other upstream 3114114 4223593 ~ 4223779 (+) True G180162
TU204573 other upstream 3114164 4223579 ~ 4223779 (+) False G180162
TU206748 other downstream 556817 7895876 ~ 7895913 (+) True G182040

Expression Profile