RNA id: TU206695


Basic Information

Item Value
RNA id TU206695
length 238
lncRNA type intronic
GC content 0.45
exon number 1
gene id G181997
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7345261 ~ 7345498 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCCCTCTGTCACTTTCTCTCTCTGGTGGTGGTAATCTTAACCACTAAAAGGTGCTAACTCCTATTAAGCTGTCAGAGCTCTGTGTGTAAGCCAATCCGGCCAATCACTTATCAGCGGCACTGACAGACTGAAACAGTGTCATTGTGGTAATCGGAGACATTTCAGTTTCAGCACACGCACACACCTGCACACAAACATACACACACATAACTGTATGAGAGTAACACATACTCACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206693 lncRNA upstream 3945 7340986 ~ 7341316 (+) True G181995
TU206690 lncRNA upstream 5946 7339090 ~ 7339315 (+) True G181992
TU206689 lncRNA upstream 6202 7338771 ~ 7339059 (+) True G181991
TU206543 lncRNA upstream 272240 7072199 ~ 7073021 (+) False G181870
TU206544 lncRNA upstream 272240 7072790 ~ 7073021 (+) True G181870
TU206696 lncRNA downstream 1007 7346505 ~ 7346767 (+) True G181998
TU206697 lncRNA downstream 1307 7346805 ~ 7347202 (+) True G181999
TU206698 lncRNA downstream 4474 7349972 ~ 7350205 (+) True G182000
TU206704 lncRNA downstream 38068 7383566 ~ 7384309 (+) True G182004
TU206715 lncRNA downstream 54668 7400166 ~ 7400397 (+) True G182014
CI01000039_07324920_07329407.mRNA mRNA upstream 15789 7324681 ~ 7329472 (+) False CI01000039_07324920_07329407
CI01000039_07299805_07316808.mRNA mRNA upstream 27286 7299805 ~ 7317975 (+) True CI01000039_07299805_07316808
CI01000039_07268272_07278840.mRNA mRNA upstream 66362 7268169 ~ 7278899 (+) True CI01000039_07268272_07278840
CI01000039_07259359_07263181.mRNA mRNA upstream 81633 7259230 ~ 7263628 (+) True CI01000039_07259359_07263181
CI01000039_07236216_07240207.mRNA mRNA upstream 104047 7235981 ~ 7241214 (+) True CI01000039_07236216_07240207
CI01000039_07362633_07380267.mRNA mRNA downstream 16734 7362232 ~ 7380499 (+) True CI01000039_07362633_07380267
CI01000039_07394034_07396192.mRNA mRNA downstream 47295 7392793 ~ 7396259 (+) True CI01000039_07394034_07396192
CI01000039_07412923_07415375.mRNA mRNA downstream 67223 7412721 ~ 7415525 (+) True CI01000039_07412923_07415375
CI01000039_07425682_07427826.mRNA mRNA downstream 80184 7425682 ~ 7427957 (+) True CI01000039_07425682_07427826
CI01000039_07442137_07446489.mRNA mRNA downstream 96094 7441592 ~ 7447160 (+) True CI01000039_07442137_07446489
TU206652 other upstream 20564 7320684 ~ 7323274 (+) True G181961
TU205651 other upstream 2496698 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182
TU204575 other upstream 3120604 4223579 ~ 4223779 (+) True G180162
TU206748 other downstream 550378 7895876 ~ 7895913 (+) True G182040

Expression Profile