RNA id: TU207980


Basic Information

Item Value
RNA id TU207980
length 267
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G183151
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7496060 ~ 7496326 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAATCATGTGATTTGATTAAATGAGGCTTCGTTATGTCATAAGTGTTTCGAAATTTCAATAGTTCACTTGACTTTGGCAGTTTGATACACGCTCCGAACCACTGATTCAAAACAAAATATTCGTAAAGCTTCAAAGCTTCATGAAGCAGTGTTTTGAAATTGCCCATCACTAGAAACTAGGAATGCACCGATACCATTTTTTAAGGACCGAGTACGAGTACCGATATTTTTTTCTGGTACTCGCTGATACCGATACCGATGCCTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207979 lncRNA downstream 49 7495765 ~ 7496011 (-) True G183150
TU207972 lncRNA downstream 10575 7485119 ~ 7485485 (-) True G183143
TU207971 lncRNA downstream 11252 7484577 ~ 7484808 (-) True G183142
TU207969 lncRNA downstream 14067 7481633 ~ 7481993 (-) True G183140
TU207964 lncRNA downstream 30870 7463121 ~ 7465190 (-) True G183135
TU207983 lncRNA upstream 98798 7595124 ~ 7595358 (-) True G183154
TU208054 lncRNA upstream 238217 7734543 ~ 7734910 (-) True G183212
TU208061 lncRNA upstream 274103 7770429 ~ 7775182 (-) True G183214
TU208078 lncRNA upstream 280402 7776728 ~ 7777392 (-) True G183231
TU208079 lncRNA upstream 282005 7778331 ~ 7778642 (-) True G183232
CI01000039_07450597_07454594.mRNA mRNA downstream 41430 7449808 ~ 7454630 (-) True CI01000039_07450597_07454594
CI01000039_07401817_07402410.mRNA mRNA downstream 93421 7400571 ~ 7402639 (-) True CI01000039_07401817_07402410
CI01000039_07385848_07389331.mRNA mRNA downstream 105570 7384829 ~ 7390490 (-) True CI01000039_07385848_07389331
CI01000039_07320926_07323244.mRNA mRNA downstream 171407 7320717 ~ 7324653 (-) True CI01000039_07320926_07323244
CI01000039_07165860_07166458.mRNA mRNA downstream 329602 7164783 ~ 7166458 (-) True CI01000039_07165860_07166458
CI01000039_07498583_07505779.mRNA mRNA upstream 2177 7498503 ~ 7506602 (-) True CI01000039_07498583_07505779
CI01000039_07523213_07573865.mRNA mRNA upstream 26871 7523197 ~ 7576151 (-) True CI01000039_07523213_07573865
CI01000039_07592640_07593317.mRNA mRNA upstream 96222 7592548 ~ 7595053 (-) True CI01000039_07592640_07593317
CI01000039_07619613_07632295.mRNA mRNA upstream 122554 7618880 ~ 7632295 (-) True CI01000039_07619613_07632295
CI01000039_07658015_07658757.mRNA mRNA upstream 161214 7657540 ~ 7659052 (-) True CI01000039_07658015_07658757
TU207766 other downstream 358293 7134107 ~ 7134198 (-) True G182956
TU207638 other downstream 847484 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 860860 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 987627 6507955 ~ 6508433 (-) True G182771
TU207225 other downstream 1859460 5636247 ~ 5636600 (-) True G182470
TU208115 other upstream 475790 7972116 ~ 7975045 (-) True G183261

Expression Profile