RNA id: TU208078


Basic Information

Item Value
RNA id TU208078
length 665
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G183231
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7776728 ~ 7777392 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGCAATGGAACGTTCTATTAAGTGTCGCTTCTTGTTAGTGTATATTCTTTGTTTACAGCCCGCCCGCGGAAGATAGGGGTGGGGTGAACAGTAGCTCATTATCATTTAAAGGGACATGCACCGAAACGGCTCGCTGTGAACAGAGCTGTTTTTGACAAGGTAAAAGGGTGTTTTTTTACACAACCATTAAGAAATTTTAATCAAAGTATGTTATAGACTTTTCATGAAGACCCTAAAGAATCATACTAACTTGTGGAAAATTGGCATCTGATGTCCCCTTTAAAGGTGCAGTGTGTGAACTTTAGCGGCATTTGGCGGTGAGGTTGCGAACTGCAACCAACGGCAGCTCACCCCTCTCTTTCGAAGCAAATAGAGAAGCTACGGTGGCCGACACAAGTCAAAGATGTCGTCGTCTGAAACAGCAGAGAGTACGTTAGCCAGTCAAGCAATGAGGTTTTTTCTTACTTTATAACAAAGAACGGTCTCTGCTTCTAATAAACCAGACTACGACTACTACTACTACTTCTTCGTGCGTATTCAACGTAGTGACGATGCCGATGCAAGCTGCCTCTAAAAACACGAACGATTTAGAAGAAGAACAACGTAGTGATGAAACGCGCTCTGTAGAGTGTTTGTCCGTTTAGGGCTGCTGTAGAAACATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208061 lncRNA downstream 1546 7770429 ~ 7775182 (-) True G183214
TU208054 lncRNA downstream 41818 7734543 ~ 7734910 (-) True G183212
TU207983 lncRNA downstream 181370 7595124 ~ 7595358 (-) True G183154
TU207980 lncRNA downstream 280402 7496060 ~ 7496326 (-) True G183151
TU207979 lncRNA downstream 280717 7495765 ~ 7496011 (-) True G183150
TU208079 lncRNA upstream 939 7778331 ~ 7778642 (-) True G183232
TU208080 lncRNA upstream 2671 7780063 ~ 7780273 (-) True G183233
TU208136 lncRNA upstream 80893 7858285 ~ 7861483 (-) True G183282
TU208165 lncRNA upstream 115572 7892964 ~ 7893415 (-) True G183311
TU208168 lncRNA upstream 117597 7894989 ~ 7895210 (-) True G183314
CI01000039_07658015_07658757.mRNA mRNA downstream 117676 7657540 ~ 7659052 (-) True CI01000039_07658015_07658757
CI01000039_07619613_07632295.mRNA mRNA downstream 144433 7618880 ~ 7632295 (-) True CI01000039_07619613_07632295
CI01000039_07592640_07593317.mRNA mRNA downstream 181675 7592548 ~ 7595053 (-) True CI01000039_07592640_07593317
CI01000039_07523213_07573865.mRNA mRNA downstream 200577 7523197 ~ 7576151 (-) True CI01000039_07523213_07573865
CI01000039_07498583_07505779.mRNA mRNA downstream 270126 7498503 ~ 7506602 (-) True CI01000039_07498583_07505779
CI01000039_07781930_07783389.mRNA mRNA upstream 4498 7781890 ~ 7783694 (-) True CI01000039_07781930_07783389
CI01000039_07908291_07909766.mRNA mRNA upstream 130512 7907904 ~ 7910468 (-) True CI01000039_07908291_07909766
CI01000039_07952703_07961286.mRNA mRNA upstream 174894 7952286 ~ 7962019 (-) True CI01000039_07952703_07961286
CI01000039_07987279_07996351.mRNA mRNA upstream 209820 7987212 ~ 7996921 (-) True CI01000039_07987279_07996351
CI01000039_08003424_08011297.mRNA mRNA upstream 226018 8003410 ~ 8012533 (-) False CI01000039_08003424_08011297
TU207766 other downstream 638961 7134107 ~ 7134198 (-) True G182956
TU207638 other downstream 1128152 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 1141528 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 1268295 6507955 ~ 6508433 (-) True G182771
TU207225 other downstream 2140128 5636247 ~ 5636600 (-) True G182470
TU208115 other upstream 194724 7972116 ~ 7975045 (-) True G183261

Expression Profile