RNA id: TU208080


Basic Information

Item Value
RNA id TU208080
length 211
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G183233
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7780063 ~ 7780273 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGCATTTGCTCATCTGCAATACGTCTATAGGACGTTTCCTGTCAGATGTCAAATAGACGTTTAGAAGATGTCTTTAAGATGTTTATGATTTAGAATGTATGTAAAACTGACATCTTAAAGATGTCTATCAGATGTTTGTAAACAGCAGATGTTTTCCAGATGAAGTGATCTTTAACAGACATCTTGCAGATGTATGTGTGCTATCTGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208079 lncRNA downstream 1421 7778331 ~ 7778642 (-) True G183232
TU208078 lncRNA downstream 2671 7776728 ~ 7777392 (-) True G183231
TU208061 lncRNA downstream 4881 7770429 ~ 7775182 (-) True G183214
TU208054 lncRNA downstream 45153 7734543 ~ 7734910 (-) True G183212
TU207983 lncRNA downstream 184705 7595124 ~ 7595358 (-) True G183154
TU208136 lncRNA upstream 78012 7858285 ~ 7861483 (-) True G183282
TU208165 lncRNA upstream 112691 7892964 ~ 7893415 (-) True G183311
TU208168 lncRNA upstream 114716 7894989 ~ 7895210 (-) True G183314
TU208172 lncRNA upstream 115520 7895793 ~ 7898833 (-) True G183316
TU208131 lncRNA upstream 139440 7919713 ~ 7920638 (-) True G183277
CI01000039_07658015_07658757.mRNA mRNA downstream 121011 7657540 ~ 7659052 (-) True CI01000039_07658015_07658757
CI01000039_07619613_07632295.mRNA mRNA downstream 147768 7618880 ~ 7632295 (-) True CI01000039_07619613_07632295
CI01000039_07592640_07593317.mRNA mRNA downstream 185010 7592548 ~ 7595053 (-) True CI01000039_07592640_07593317
CI01000039_07523213_07573865.mRNA mRNA downstream 203912 7523197 ~ 7576151 (-) True CI01000039_07523213_07573865
CI01000039_07498583_07505779.mRNA mRNA downstream 273461 7498503 ~ 7506602 (-) True CI01000039_07498583_07505779
CI01000039_07781930_07783389.mRNA mRNA upstream 1617 7781890 ~ 7783694 (-) True CI01000039_07781930_07783389
CI01000039_07908291_07909766.mRNA mRNA upstream 127631 7907904 ~ 7910468 (-) True CI01000039_07908291_07909766
CI01000039_07952703_07961286.mRNA mRNA upstream 172013 7952286 ~ 7962019 (-) True CI01000039_07952703_07961286
CI01000039_07987279_07996351.mRNA mRNA upstream 206939 7987212 ~ 7996921 (-) True CI01000039_07987279_07996351
CI01000039_08003424_08011297.mRNA mRNA upstream 223137 8003410 ~ 8012533 (-) False CI01000039_08003424_08011297
TU207766 other downstream 642296 7134107 ~ 7134198 (-) True G182956
TU207638 other downstream 1131487 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 1144863 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 1271630 6507955 ~ 6508433 (-) True G182771
TU207225 other downstream 2143463 5636247 ~ 5636600 (-) True G182470
TU208115 other upstream 191843 7972116 ~ 7975045 (-) True G183261

Expression Profile