RNA id: TU208185



Basic Information


Item Value
RNA id TU208185
length 1486
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G183328
representative True

Chromosome Information


Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7975563 ~ 7977048 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATATTTATAATCATCACATATAAGGCTATATATAGTGAGAATTAAGTGTGTATCTTAAGTAGCAAGTCTATAGTATAGGCTACTATTTCTAAAAAGTTGATACCTTTTGGCACCTTTGAAATTTCTGTAGCAAATTAGCTCAAAAGAAATATGAATAATTAATCATAACTAGTTATAATTAATTATAAATATTTGGATCAGTTAATAAAATTAACTTAATGTAATAAAATTAATATTACAATCAATTAACCTGTTGTCCAATGAACGCACAGTGTTAATTGTTGATTAATTCTAAGAAATGTTCATTTCCAGGTTATGGGAAACAACAATCTTATGTAAAGTACTACTCAGAGCATGTAGTCAGGATCTGTATGAATAGGGACTCCAGTATGAGCATGAAACACGGACAACTTTACGTGTGACATGAACAAGACTTTATTAACTAGACTAAACACTTAACTACTCTAACATTCACACACATACATTTACAGTTTACCAAGAGAAAGAGAGAGCTGAAGCAGAATACAGGAAAGCAAGAAGTTACAGCACTGTTTGAAATTCAGAAGATCCACAGCCTTGAGAAAACCATCAGTTTAGTTTTAACAGGCCCTTCTTTAAAAGGGGTAAGGATACTCAATGTGTCAAATAATGAGACTAAGTTTGATACTTGCATGTCTCGCCCATTTGAATTAAAACTGTCCTGATGCAATTTGTGGAGGCTCCCATTCAATCTTTGCTGATATTGTCTTGATGAAAGAGAACCAGTTGGATTCAGAGGATCTTTGGTGAAGCACAAGCTTGGGGTTCCTTTGAAGCTTCTAGCTTCTTAGCATCATCTTCACATCAGCATTTTTCAGTACAGGAAAAGAGAGAGGCCTGTGATCTTGTTATCAGTGATTTTAAAGGGTGAAGATGTCACACCCTCTTGAGGTGTCTGAGCCAATAAGGAGGTTTCCGTTCAGAGGGAAACTTTTACGAGTCTTTGTTCTGTAGCAAGATATTAGCATAAGACATTGGTTTGGATGTTTGAGAGAAGAACCTTCTAGATTCTTATAATACTACTGTGTCACAAAGTTAGTAACATGTAACATAAATTACCGAATAGGAAACGAAAGTTACGAGAGTCCACAGATACCAAACATGCTACCCATGTGATTTTAGGTAATTATAAATTTGCAACTCTGAAACATTAATACCAAAATAGTTCATAAGAGAGAATTAATACATAAAGCCTATAAAAGTAAAGTCATGAGATGGGAAAATTGGATACATGTTTATACATTTCTCAAGTGGTTATATATAGAATATATAGGATTAAGAGGGTTTATTTGTCCTTCTCAGAAAGAATGAAGTCAGAGTCACTAGTCTCTGCAAAATTCTTTCTGATCATAAAAGTTCTTATCAGTTTTCCTGTGTCCTGTAACAGGACACCTAGTTCTGCCTGTGTGTTAGCTACATTTGGGATGCTAGTTGCAGTTTTAGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208109 lncRNA downstream 10180 7962056 ~ 7965383 (-) True G183255
TU208176 lncRNA downstream 52616 7922737 ~ 7922947 (-) True G183319
TU208131 lncRNA downstream 54925 7919713 ~ 7920638 (-) True G183277
TU208172 lncRNA downstream 76730 7895793 ~ 7898833 (-) True G183316
TU208168 lncRNA downstream 80353 7894989 ~ 7895210 (-) True G183314
TU208104 lncRNA upstream 25430 8002478 ~ 8004484 (-) True G183250
TU208186 lncRNA upstream 31776 8008824 ~ 8009050 (-) True G183329
TU208130 lncRNA upstream 66983 8044031 ~ 8044365 (-) True G183276
TU208190 lncRNA upstream 69683 8046731 ~ 8046988 (-) True G183333
TU208191 lncRNA upstream 70290 8047338 ~ 8047596 (-) True G183334
CI01000039_07952703_07961286.mRNA mRNA downstream 13544 7952286 ~ 7962019 (-) True CI01000039_07952703_07961286
CI01000039_07908291_07909766.mRNA mRNA downstream 65095 7907904 ~ 7910468 (-) True CI01000039_07908291_07909766
CI01000039_07781930_07783389.mRNA mRNA downstream 191869 7781890 ~ 7783694 (-) True CI01000039_07781930_07783389
CI01000039_07658015_07658757.mRNA mRNA downstream 316511 7657540 ~ 7659052 (-) True CI01000039_07658015_07658757
CI01000039_07619613_07632295.mRNA mRNA downstream 343268 7618880 ~ 7632295 (-) True CI01000039_07619613_07632295
CI01000039_07987279_07996351.mRNA mRNA upstream 10164 7987212 ~ 7996921 (-) True CI01000039_07987279_07996351
CI01000039_08003424_08011297.mRNA mRNA upstream 26362 8003410 ~ 8012533 (-) False CI01000039_08003424_08011297
CI01000039_08022279_08026193.mRNA mRNA upstream 44851 8021899 ~ 8026193 (-) True CI01000039_08022279_08026193
CI01000039_08038068_08041738.mRNA mRNA upstream 59871 8036919 ~ 8041738 (-) True CI01000039_08038068_08041738
CI01000039_08062731_08064494.mRNA mRNA upstream 85545 8062593 ~ 8064494 (-) True CI01000039_08062731_08064494
TU208115 other downstream 518 7972116 ~ 7975045 (-) True G183261
TU207766 other downstream 837796 7134107 ~ 7134198 (-) True G182956
TU207638 other downstream 1326987 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 1340363 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 1467130 6507955 ~ 6508433 (-) True G182771

Expression Profile