RNA id: CI01000040_00153873_00173202.mRNA


Basic Information

Item Value
RNA id CI01000040_00153873_00173202.mRNA
length 1320
RNA type mRNA
GC content 0.46
exon number 8
gene id CI01000040_00153873_00173202
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 153873 ~ 173202 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATGGAAATTAGGTTTTGAGTCTGTTTACAGTATTGGACAGGTGTTGGCAAATCCACCGAATGAGACAAGGATATATTTGGATAACATTACGCGCATTTTGGATAGATTGTTAGATGGATATGACAACAGACTCCGACCTGGATTTGGAGGTCCTGTCACAGAGGTTAAAACGGACATCTTTGTCACCAGCTTTGGTCCTGTTTCTGATGTGGAAATGGAATACACAATGGATGTGTTTTTTCGGCAAACATGGATTGATGACCGGCTGAAATTTGAGGGCCCCATTGAGATCCTGCGTCTCAACAACCTAATGGTCAGCAAGATCTGGACACCGGATACATTTTTCCGAAATGGCAAACGTTCTATTTCACACAACATGACCACTCCCAACAAGCTGTTCCGCATCATGCAGAACGGAACTATTCTGTACACCATGAGGTTAACCATCAATGCAGAGTGCCCCATGCGATTGATAAATTTTCCAATGGATGGACATTCATGCCCTTTGAAATTTGGCAGCTATGCCTACCCAATGAGTGAGATTGTTTACACATGGAAGAAAGGACCATTATTTTCAGTGGAAGTTCCTCAAGAGAGTTCCAGTCTACTACAGTATGATCTCATTGGACAGACGGTGTCTAGTGAGAGGTTGAAATCAAACACAGGTGAATACATAGTCATGACGGTGTACTTCCACCTGCAGAGGAAAATGGGTTTCTTCTTGATCCAGACATACATCCCTTGCATTATGACTGTGATCTTAGCGCAGGTCTCCTTCTGGATTGACAAAGAGTCAGTACCTGCCAGAACTGTGTTTGGCATCACCACAGTTCTAACCATGACCACACTGAGCATTAGCGCCCGTCATTCGTTACCAAAGGTCTCCTACGCCACCGCCATGGACTGGTTCATCGCTGTCTGCTTCGCATTTGTCTTTTCTGCCCTTATCGAGTTTGCTGCTGTCAACTATTTCTCCACCTTGCAGGCCAATAAGGAACTTCGGCGGGCCAATATGGCCTGTGCTGCGGCCACAGCAGCGGCCAGAAGTGATGGAGAAGTTGTTTCGAATCCTCTAGACCCTGGAGGTGTGCTGAAGAAAAGGCTGAACTCCCTCTCCCAAAGAGATGCTACTGACAGGTTCCCCAGGCCGCCTCAGTGTGATTTCCATCAGCAAGGTTCCACTGTCCCTGCCAACAACATGCTGATAGGAACTAGTATTATTGACAAGTACTCACGGATCCTCTTTCCTCTGTCCTTTGGGGCCTTCAACTTGGTCTACTGGATTGTATATCTCACCAAAGACACTATGGAATCCAGG

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208369 lncRNA downstream 37779 115868 ~ 116094 (-) True G183476
TU208368 lncRNA downstream 66784 82889 ~ 87089 (-) True G183475
TU208393 lncRNA upstream 15214 188416 ~ 188660 (-) True G183500
TU208395 lncRNA upstream 17959 191161 ~ 191518 (-) True G183502
TU208402 lncRNA upstream 24214 197416 ~ 313352 (-) False G183508
TU208401 lncRNA upstream 131850 305052 ~ 313352 (-) True G183508
TU208494 lncRNA upstream 171130 344332 ~ 346939 (-) True G183598
CI01000040_00081665_00111856.mRNA mRNA downstream 41679 80979 ~ 112194 (-) True CI01000040_00081665_00111856
CI01000040_00002763_00060396.mRNA mRNA downstream 93477 2763 ~ 60396 (-) True CI01000040_00002763_00060396
CI01000040_00413047_00426023.mRNA mRNA upstream 239803 413005 ~ 427064 (-) False CI01000040_00413047_00426023
CI01000040_00569008_00598590.mRNA mRNA upstream 395558 568760 ~ 598590 (-) True CI01000040_00569008_00598590
CI01000040_00623449_00625433.mRNA mRNA upstream 450221 623423 ~ 626036 (-) True CI01000040_00623449_00625433
CI01000040_00626750_00628543.mRNA mRNA upstream 453279 626481 ~ 628559 (-) False CI01000040_00626750_00628543
CI01000040_00701332_00746419.mRNA mRNA upstream 527631 700833 ~ 746964 (-) True CI01000040_00701332_00746419
TU208367 other downstream 103147 46627 ~ 50726 (-) True G183474
TU208782 other upstream 452630 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208899 other upstream 659938 833140 ~ 833541 (-) True G183972
TU210608 other upstream 2422044 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 2422177 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 2818986 2992188 ~ 2992683 (-) True G185593

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00039040 True 3324 mRNA 0.45 10 NC_007132.7 42156949 ~ 42202792 (-)