RNA id: CI01000040_00413047_00426023.mRNA



Basic Information


Item Value
RNA id CI01000040_00413047_00426023.mRNA
length 1932
RNA type mRNA
GC content 0.41
exon number 6
gene id CI01000040_00413047_00426023
representative False

Chromosome Information


Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 413005 ~ 427064 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCTATTTATCATATATAATAGTTATATAGCCATAAAAAATATACAGCGGATAAAATAAGTATTGCATACGTTAACTTTTTTTTTTTTTTTTATTAAACACTGTTCCAATGCAGCAATTCACATAACATTTTGAGCAGACATCGACATTAACTTAAGAAATCTACACAAACAAAAAAATCATAATTTTACAACCCATAAAAAAAGCTTTGTGTACTAAAGGGAAATGACTCAGGAAGAAAGTATTGAATGCAATGACAGCTTCAAGGCACATCCTGTATGACCAAACTTTAAATCTTGAATATTCTGGGAGATTCTAACAACTTTATTTTCTTCTTCTGGAACCAATTCAAACTCTCCTTTGCAGTGTGTTTTGGATTGTTGTCCTGGTGGAAGGTCCACCAAAGTCTCATCTTCATCATCCTGGTAGATAGCAACAAATTCATCTCAAGAATTCCCAGTACATGGCTCCATTCATCTTGCCTTCAATATTTTTGATTCTGCCAGTACCATGAGAAGAGAAACCGCACCATACCATGATGCTTCCACCTCGAAAACATCACTGTTAATGTGGTATTTTTTTAGGATCATATGCAAAGCCATTTCTCCTTCAAACATGGCATGTGGTATTGTTGCCAAAAGTTTGATTTTTGTCTCATCTGCCCATACTAAATTCTCCCAGTAGTTCAGACCTTTCCAAATGTTATGTAGAAAACTTCAGCATGCCTTTTCTTCAATAATGGAGCTTTCTGTGGTGAGCGTGCATGGAGACTGTGGCGGTGGAGTGCATTTCCTGTTGTTTTCTCTGTGACAACTGTACCTGCTGCCTCCAAGTCTTTCTGGACCTCTTTCTGAGTGGTCTTTAGTTCTTGGGCTACTCTTCTGTCTAACCTTCTGACTCCCTGATCAGAAATCTTGCGAGGAGCTCCTTTGCATGGCCAGTTGATGGTGGAATGATGTTCCTTTCAGTTGTGGAAAATGGCCCCAGTGGTGTTTACAGGAACATTTAAGAGTTGGAAAATCCTTCTGTAACCAGTACTGTTATGTATGGCAAAAATCTTGTTGTGAAAGTCTTGGGAGAGCTCTTTGCCTCTACCCATCATGAGATGTCCAATACTTGCATTCAGAGGTGGCTCACTCAGATTGCTCTGGAAGAGTATGTGAACTGCAAACCTGAGGTCTCTTCGCAAATTTGCTGTAGAGTTCAAGCCTGGGCCAATAGGCTGCGTGGCTCAGGGATGTTTACAGGTCTTGAAGCCCCTCCAGTATTGTTCCTGGTGTGTGTTTTGTCTGGTTGCCATGCTGAAGATGAGCTCATCCTAGTTTGTATGTGTGCTGCATGGTCCTTAAAGAACTTCTCTGTATTTGGCTTGTTTTTCGTTCTGGGGACCCGAGATGACAAGACAAGAAGGTATCTTTCTTTTTTTGGTCATGACTGTGAGGAAAAAGAAGCTGTCATCTCTGACAATGCTTCAAATCAGCCTTCCACCGCTGAAGCCCCTGCATCTGTTCTGCTCTTGATCTTCTACCAATTTTTGGATTGTGGGTGTTATGGTCTTATGTTGTGGCAGGAGAGAACAGTGGGACTAGAGTTCACCTGGGAGACATCTGGTAAAGAAGTTGTTTCTGAGTCTGGTTGTGCTAGGGCTGACTTCTCATCGCTGGTGATCAGTCAGACCACTATTACATTATCTGCGAATTTGATGATCGAGTTAGTATGGAGCACCACATGTGACATCCTGGAAGAAGAGAGAGAGAGAGGGAAAAAGAGATATCATGGTGATGGTGTGTCCGTTGGGAGCCAATGTCCACTGCTGAAGATGGGGCTGACTATCGAATTCACTCATAAAAATCATAAACATTACCCATATGGGACTGTGCACTGGAAATGAAAGAGGCGACAACCATAACATTCATTTAAGCTTTCAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208541 lncRNA downstream 15808 380596 ~ 397197 (-) True G183641
TU208494 lncRNA downstream 66066 344332 ~ 346939 (-) True G183598
TU208402 lncRNA downstream 99653 197416 ~ 313352 (-) False G183508
TU208401 lncRNA downstream 99653 305052 ~ 313352 (-) True G183508
TU208395 lncRNA downstream 221487 191161 ~ 191518 (-) True G183502
TU208584 lncRNA upstream 1611 428675 ~ 428891 (-) True G183684
TU208611 lncRNA upstream 27414 454478 ~ 454794 (-) True G183711
TU208622 lncRNA upstream 48854 475918 ~ 476251 (-) True G183722
TU208625 lncRNA upstream 53091 480155 ~ 480376 (-) True G183725
TU208626 lncRNA upstream 53391 480455 ~ 480657 (-) True G183726
CI01000040_00153873_00173202.mRNA mRNA downstream 239803 153873 ~ 173202 (-) True CI01000040_00153873_00173202
CI01000040_00081665_00111856.mRNA mRNA downstream 300811 80979 ~ 112194 (-) True CI01000040_00081665_00111856
CI01000040_00002763_00060396.mRNA mRNA downstream 352609 2763 ~ 60396 (-) True CI01000040_00002763_00060396
CI01000040_00569008_00598590.mRNA mRNA upstream 141696 568760 ~ 598590 (-) True CI01000040_00569008_00598590
CI01000040_00623449_00625433.mRNA mRNA upstream 196359 623423 ~ 626036 (-) True CI01000040_00623449_00625433
CI01000040_00626750_00628543.mRNA mRNA upstream 199417 626481 ~ 628559 (-) False CI01000040_00626750_00628543
CI01000040_00701332_00746419.mRNA mRNA upstream 273769 700833 ~ 746964 (-) True CI01000040_00701332_00746419
CI01000040_00760116_00779888.mRNA mRNA upstream 333052 760116 ~ 780882 (-) True CI01000040_00760116_00779888
TU208367 other downstream 362279 46627 ~ 50726 (-) True G183474
TU208782 other upstream 198768 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208899 other upstream 406076 833140 ~ 833541 (-) True G183972
TU210608 other upstream 2168182 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 2168315 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 2565124 2992188 ~ 2992683 (-) True G185593

Expression Profile