RNA id: TU208583


Basic Information

Item Value
RNA id TU208583
length 216
lncRNA type sense_over
GC content 0.38
exon number 1
gene id CI01000040_00413047_00426023
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 413005 ~ 427064 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTTCCACCTCGAAAACATCACTGTTAATGTGGTATTTTTTTAGGATCATATGCAAAGCCATTTCTCCTTCAAACATGGCATGTGGTATTGTTGCCAAAAGTTTGATTTTTGTCTCATCTGCCCATACTAAATTCTCCCAGTAGTTCAGACCTTTCCAAATGTTATGTAGAAAACTTCAGCATGCCTTTTCTTCAATAATGGAGCTTTCTGTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208541 lncRNA downstream 29113 380596 ~ 397197 (-) True G183641
TU208494 lncRNA downstream 79371 344332 ~ 346939 (-) True G183598
TU208402 lncRNA downstream 112958 197416 ~ 313352 (-) False G183508
TU208401 lncRNA downstream 112958 305052 ~ 313352 (-) True G183508
TU208395 lncRNA downstream 234792 191161 ~ 191518 (-) True G183502
TU208584 lncRNA upstream 2150 428675 ~ 428891 (-) True G183684
TU208611 lncRNA upstream 27953 454478 ~ 454794 (-) True G183711
TU208622 lncRNA upstream 49393 475918 ~ 476251 (-) True G183722
TU208625 lncRNA upstream 53630 480155 ~ 480376 (-) True G183725
TU208626 lncRNA upstream 53930 480455 ~ 480657 (-) True G183726
CI01000040_00153873_00173202.mRNA mRNA downstream 253108 153873 ~ 173202 (-) True CI01000040_00153873_00173202
CI01000040_00081665_00111856.mRNA mRNA downstream 314116 80979 ~ 112194 (-) True CI01000040_00081665_00111856
CI01000040_00002763_00060396.mRNA mRNA downstream 365914 2763 ~ 60396 (-) True CI01000040_00002763_00060396
CI01000040_00569008_00598590.mRNA mRNA upstream 142235 568760 ~ 598590 (-) True CI01000040_00569008_00598590
CI01000040_00623449_00625433.mRNA mRNA upstream 196898 623423 ~ 626036 (-) True CI01000040_00623449_00625433
CI01000040_00626750_00628543.mRNA mRNA upstream 199956 626481 ~ 628559 (-) False CI01000040_00626750_00628543
CI01000040_00701332_00746419.mRNA mRNA upstream 274308 700833 ~ 746964 (-) True CI01000040_00701332_00746419
CI01000040_00760116_00779888.mRNA mRNA upstream 333591 760116 ~ 780882 (-) True CI01000040_00760116_00779888
TU208367 other downstream 375584 46627 ~ 50726 (-) True G183474
TU208782 other upstream 199307 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208899 other upstream 406615 833140 ~ 833541 (-) True G183972
TU210608 other upstream 2168721 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 2168854 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 2565663 2992188 ~ 2992683 (-) True G185593

Expression Profile