RNA id: TU208782



Basic Information


Item Value
RNA id TU208782
length 1477
RNA type TUCP
GC content 0.32
exon number 4
gene id CI01000040_00626750_00628543
representative True

Chromosome Information


Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 625832 ~ 628694 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTGGATAAGACAGTGATGTGAATTCCAGGCTAATTGATTTATATATCATGTCATGTTTGGTAATGAACACAGCATGTTTGAATTTGCTGTGTTAAGCAGTGTATAAATGCAGCTCACAGAGAGCAGTGTTGTTCACAGGGAGCAGACAGCATGCTTGCGCACACATCTCTGGTTCTGATTCTGGTTCTGATGCCCTCGGTTTGGGCTCAGCCGTACCCCATACCACCAACCTGTTACACTAAAGTGCTGAACATGGGTAAAGAGATCACTCAAAGAGCGGCAGAAATTAAAAAAGACTTCGACACTTTTAGATGTGCAGCTCACCTGCCCGACCTGTACATCGATGTTCATAACGCTTGTGTAATGTCCACGATGAACTCTTACCTGTCTCTGCTGGGCGGCATGAGAGAACGCCGATGTTCGTACAACAGGAAAGTGCAAAGCCTATATGCTATGATTAGGCAACTCTTTATCATTATATCACAAAAATGTCACGGGGACTTGGTTTTTACCTATGATAACTGTGAAGCATTACAGCACAGAGGATGGAGAGGCTGAAATCACTGGAGGGAGTTTGGAGGATGATTGTACAAAGATCATAAAGAGCCCTTTACTCAACGTGGTAACAGATGTTATTCATAATCAGCAGTTTTGAAAAACATTTGTTTCAACATTTTTTTTTTTTTATTGTTTAAAAGTAAAAAGTAACATTTTTCTTACATATAAACGGTCACATCATAATCATGATTTCAGGTTTTCCAAAAAAAAAAAAAAAAAGTTTTCAATGTTTTAATGTTTTTTTTTTTTTTTTATCACATGATAATAAAAAAGCGTGGTTACTTGTTACATGACACTGACTTTGATGGACAAAATCTTTTCCAAATATTAGTAATATTACAAAAATAAATATTGACTTCTTTTATAGGAATAATATTACAAAATGGCTGCTAAGTTGTTCCCCTTAACTTCACTTTAACCCACAAAAATATAAAAAGAAAATTATTTAATAAGTTCAAAACATGGTTATCATAGAATGTATGTATTTATAAGTGGCATTTTTATCTATTTTCAAATAACTAAACATCTAAATATCACATCATAGACTACATATATGTTAGTGTAGGCCTACATTTCACAAACATCTAATATTGCAGTTCAGTAATGTGACAAAAAAAATCTTTATTTGAAACTTTTTAAATGTTTATTGTTTTAAATGTTGTTTTATATTCACTATATTCTATATAAAGTGTTGTTATATACATTATATTTTGATATGCCATAATGACGTGTTTTCTATTCTAAATAAATAAAAAAAACATTTTCCACAAATTCACCACAAGGTGGGGGATGTGTGCAGCAGTTGTTGTTGTTGTTTATCAATAGCCTACTGTTCTTTTTTTCTGTGCGTCTTGACTAGATTATTATAATAACATTATTAAATACAAAGATTAAGATGAAATAAATTCATAAAAAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208805 lncRNA downstream 60424 565186 ~ 565408 (-) True G183881
TU208804 lncRNA downstream 60686 564907 ~ 565146 (-) True G183880
TU208803 lncRNA downstream 60946 564654 ~ 564886 (-) True G183879
TU208626 lncRNA downstream 145175 480455 ~ 480657 (-) True G183726
TU208625 lncRNA downstream 145456 480155 ~ 480376 (-) True G183725
TU208821 lncRNA upstream 6285 634979 ~ 635312 (-) True G183897
TU208831 lncRNA upstream 18620 647314 ~ 647585 (-) True G183906
TU208832 lncRNA upstream 19948 648642 ~ 648923 (-) True G183907
TU208833 lncRNA upstream 22213 650907 ~ 651159 (-) True G183908
TU208839 lncRNA upstream 31656 660350 ~ 661056 (-) True G183913
CI01000040_00569008_00598590.mRNA mRNA downstream 27242 568760 ~ 598590 (-) True CI01000040_00569008_00598590
CI01000040_00413047_00426023.mRNA mRNA downstream 198768 413005 ~ 427064 (-) False CI01000040_00413047_00426023
CI01000040_00153873_00173202.mRNA mRNA downstream 452630 153873 ~ 173202 (-) True CI01000040_00153873_00173202
CI01000040_00081665_00111856.mRNA mRNA downstream 513638 80979 ~ 112194 (-) True CI01000040_00081665_00111856
CI01000040_00002763_00060396.mRNA mRNA downstream 565436 2763 ~ 60396 (-) True CI01000040_00002763_00060396
CI01000040_00701332_00746419.mRNA mRNA upstream 72139 700833 ~ 746964 (-) True CI01000040_00701332_00746419
CI01000040_00760116_00779888.mRNA mRNA upstream 131422 760116 ~ 780882 (-) True CI01000040_00760116_00779888
CI01000040_00795062_00809762.mRNA mRNA upstream 166243 794937 ~ 809762 (-) True CI01000040_00795062_00809762
CI01000040_00810717_00829640.mRNA mRNA upstream 181715 810409 ~ 829640 (-) True CI01000040_00810717_00829640
CI01000040_00837863_00839807.mRNA mRNA upstream 208769 837463 ~ 839807 (-) True CI01000040_00837863_00839807
TU208367 other downstream 575106 46627 ~ 50726 (-) True G183474
TU208899 other upstream 204446 833140 ~ 833541 (-) True G183972
TU210608 other upstream 1966552 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 1966685 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 2363494 2992188 ~ 2992683 (-) True G185593
TU210881 other upstream 2715781 3344475 ~ 3344880 (-) True G185681

Expression Profile