RNA id: CI01000040_01160713_01185710.mRNA


Basic Information

Item Value
RNA id CI01000040_01160713_01185710.mRNA
length 4050
RNA type mRNA
GC content 0.46
exon number 23
gene id CI01000040_01160713_01185710
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1160075 ~ 1186329 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATGCAAAATGCAAGAAAGACATGGTGGTTCAATGATGGAATAAGTGTTATTATGACTGAACAGTAGATCTGCCCTAAAATTAAGCCTACATGAAGTAAGCACTATGATACATCAGCAAACATGTCTGAATAAAGAATTTAAAACAAGAATACTGACAACTGTCAAGCTGAAAATCTTAAAAATATCACTTGTTTTCTTTTGCTCTTTAGTTAATCCCAATTAAAATGTCTAAATTACAACCAAATGTGCGAAGTATTCTCAACTGTAACTAGTCTGAACCGAACTGAACTCGCCAAGCAACTGCCATTTTGACCGTGTTTACATTTTGTCAAGTTGGTGACGCAAAGATACTTCAGCGGAGGGTGAAACATTTTTACGTCGTGACGTCCGTCGGCATAACGTCACAATTTTATATTATATATATATATATATATATATATAAAAAAAATTAAAAAAAGCAGTTGAGCTCCTGAAACGATCAGTAATGTGTTTACGTGACTCTCCCATTAGCATTTAACGATGTGTGGAAGTTAAAACTCAAACGCCAACTGAATTTGAACGTCGTTTAATTATCTATCAGCAGAAATGTCCACTTCTAGTAATTAACGTGCCAAAAAATGGCATTAAATATGAACTCTGCATCTGAAAGCGCTAGACATGAGGGGGGCCCGAAGCATTCTAGCTATGAAAGCCTTTTCCCTTTGTCTCTGTCCGCTTCCACACTGATCTGCTGTAGCGTCCCAATAAATGTGTCACCCACCAGCGAGAAACACGTAACTGCTCTAAAAGACACAGCTCGTTTAGACGAGGATGAAGAGCTGGAGGAGTCGCTGCTGTCTGAGGAAGAGTCGCTGGAAGAGCTCGACGAATCACTGCTGCTGGAGCTGGAGGAGGACCTCAAAGAAAACAGCATGTCTAAAACGGGTAAAGAAATGAAGATGTCAGTGGTGGGATTTGATGTGGGCTTCCAGAGCTGTTATGTTGCTGTCGCTCGCGCCGGTGGAATAGAGACAGTAGCGAACGAATACAGCGACCGATGTACACCGTCATTTGTATCATTTGGTCCTCGGAATCGTTCGATTGGGGCAGCCGCCAAAAGCCAGGTGGTCACAAACTGCAAGAACACTGTGCAGGGTTTTAAGCGATTCCATGGCAGGGCGTTCAGTGACCCTTATATCCAGGCGGCAAAGTCCGGCCTGGTCTATGATCTTGCTCAGATGCCGACTGGAACCACTGGCATTAAGGTCATGTATATGGAGGAAGAGAAGGTGTTCGGCATTGAGCAGGTCACTGCCATGCTGCTGACCAAACTGAAAGAGACCGCTGAAGCTGCACTCAAAAAACCTGTGGCAGACTGTGTCATCTCTGTCCCCAGCTTCTTTACTGATTCCGAGAGAAGATCAGTCATTGATGCTGCACAGATCGCAGGCCTTAACTGTCTCAGACTCATGAACGACACTACAGCAGTTGCACTGGCATATGGGATCTACAAACAGGACCTGCCCGCTCCTGAGGAGAAGCCCAGGACTGTGGTGTTTGTGGATATTGGTCATGCTAGTTACCAGGTCTCCGCGTGTGCCTTTAACAAGGGGAAGTTGAAGGTTCTGGGTTCTGCGTTTGACCCTGAGCTGGGCGGTAAAGACTTCGATGAGGTGCTGGTCCAGTACTTTTGTGAGGACTTTGCTCAGAAGTACAAGCTGGACGTGCGATCGAAGCCCCGCGCTCTGGTGCGACTCTACCAGGAGTGCGAGAAGCTGAAAAAGCTCATGAGTGCAAACTCCTCCGACTTGCCGCTCAACATTGAATGCTTCATGAATGACATCGATGTCAGCAGCACACTCAACAGAGCCAAGTTCGAGGAGCTCTGTGCAGGGCTGTTGGCCAAGGTGGAGGGTCCTCTGCGCAGCATCATGGAACAGACCAGACTGAAGAAAGAGGACATCTATGCGGTGGAGATCATTGGCGGCGCCTCCAGGATTCCAGCCATCAAAGACAAAATCAGCAAATTCTTTGGGAAGGAGCTGAGCACGACGTTGAATGCAGATGAAGCTGTGGCCAGAGGATGTGCACTGCAGTGTGCAATCCTGTCGCCCGCCTTTAAAGTGCGTGAGTTTTCCATCACAGATGTGGTGCCGTACCCCGTCTCTCTGAAGTGGACCTCAGCAGCTGATGAAGGCATCGGTGATTGCGAAGTTTTCCCAAAGAACCATGCCGCACCATTCTCTAAAGTGTTGACTTTCTTCCGGAAGGAGCCCTTCACTTTGGAGGCCTACTACAGCAATCCAAAAGAGTTGCCGTATCCCGATCCTACCATAGGCCAGTTTAACGTCCAGAAGGTGGTTCCTCAGCCGTCAGGCGAGAGCTCCAAGGTGAAGGTGAAGGTACGTGTGAATGTACATGGGGTCTTCAGTGTGTCCAGCGCCTCTCTGGTGGAGGTCGTGAAAACTGCTGAGGGAGAAGAACCCATGGAGACGGACACTCCAGCCAAAGAGGATGAGCTCCTTTACACTCATGAAATGCAAAAACAAAGGTTTCTAAGGTTATCAAAATGTCAGTCATTGCGAGTTTGGAACAAGATGCACGTGGATCAAGAAGCACAAAAGGCTCAAGGTGATGAACAGAAAGAACAAGCTGAGAAGAAATCAGACACTGAAGACATGGAGACTTCACCAGAGGACAACAAACAAGAGAAGAAGAATGAGCCTCCACAGGCCAAGAAACCCAAAGTGAAAACAAAGACGGTGGATCTGCCCATCGAGAACAGTCTGCACTGGCAGCTGGCCAGCGACATGCTCAATCTGTTCATGGAGAATGAGGGGAAGATGATAATGCAAGACAAGCTGGAGAAGGAAAGGAACGATGCAAAGAACTGTGTGGAGGAGTATGTTTATGAAATGAGAGACAAACTGCATGGAGTGCTGGAGAACTTTGTCAGTGAGGCTGATCGAGATTCTTTCTCCTTAAAACTGGAGGACACTGAAAACTGGCTGTACGAAGAAGGAGAGGACCAACAGAAGCAAGTATACATTGATAAACTGGCTGAGTTGAAGGATGAGCTGTATGATCATCTGGATGAGCTGGAGGTCATGAAGGTGGAGAAGCAGGTGAACGAAGCCATGACCTGGATGAATAACAAAATGAACCTGCAGAGCAAACAGAGTCTCAGCCAGGACCCAGCCGTTAAAGCCCAAGAGATCCAGGCCAAAACGAAGGAGCTGTATTCTGCTTGCAATCATGTTGTCAGCAAACCTAAGCCCAAAGTGGAGCCTCCAAAAGAGGAGACACCAGCCGAACAGAACGGGCCTGTTAACGGACAGGAGGGTTCAGAGGATCAACCGGCCAGCCCAGAGAAGGGCCGAGCCGCCCCAGAAACCACAGAGGCCAAACTTCCTGAAATGGACATTGACTAACTTAGCTTGCCGCTCTTCTGTGTCCGCACCAGCCTCTCTTATACGCCTCTGAGTTCGGATTAAAAACACACAAAAAAAAAAAAAACATTACTCAATTCAGCAAATGTTCTCTTGCTCTTGGTGGCATGTTTCTTTCTGTTTCACAGGATACATAAAGATCCAATCTACTTTCTTTGTTTGTTTGTTTCTTCAACAAGGAAATAACATGTGACAGGTATAGGAAGAGAACCTGGTCTTTGTTGCTTTTTCCCCTGATGGGATTATAAAGTGAGATGGACTGGTTTAGTGCTGTTTAATGGATTTCGGTTCTATTTGGAGAGTTAATTGGCATTGAAGATTAGTTGCTTCACACGTGAGATTCTTGTTGAAAGTTTCCAACCACCGGGTGTTGGTGAAGATGCACTGAAACGGAGGAGGAAGAGCCTGAACATTCGCTGACAGAAGAGGCAATGAGCGTCACTGTATGTGGAAGTAGAGCTGAGTTACTGTTATGCAGTATTTCGTTGTGAGAGGTGCGTCATGGTGCTTTTGGGTTTAGCCATGTTTGTTTTACTTTTACTTTTTCTACTCTGCAACCTGTGGGAATGATGGAGACTAATTTGGTGTCCATCCAGTCATAAATGATAATTATAAATAAA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K09489 HSPA4; heat shock 70kDa protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209543 lncRNA downstream 11793 1128537 ~ 1148282 (-) True G184497
TU209490 lncRNA downstream 173853 985862 ~ 986222 (-) True G184460
TU209471 lncRNA downstream 205402 933428 ~ 954673 (-) False G184445
TU209552 lncRNA upstream 67862 1254191 ~ 1254738 (-) True G184506
TU209631 lncRNA upstream 95647 1281976 ~ 1283267 (-) False G184573
TU209632 lncRNA upstream 95647 1281976 ~ 1284791 (-) True G184573
TU209646 lncRNA upstream 126584 1312913 ~ 1313434 (-) True G184587
TU209724 lncRNA upstream 376598 1562927 ~ 1563478 (-) False G184651
CI01000040_01150384_01152552.mRNA mRNA downstream 7523 1150035 ~ 1152552 (-) True CI01000040_01150384_01152552
CI01000040_01134768_01140438.mRNA mRNA downstream 18959 1134419 ~ 1141116 (-) True CI01000040_01134768_01140438
CI01000040_01002406_01015284.mRNA mRNA downstream 144791 1000722 ~ 1015284 (-) True CI01000040_01002406_01015284
CI01000040_00961941_00973627.mRNA mRNA downstream 186448 961941 ~ 973627 (-) True CI01000040_00961941_00973627
CI01000040_00837863_00839807.mRNA mRNA downstream 320268 837463 ~ 839807 (-) True CI01000040_00837863_00839807
CI01000040_01287654_01288940.mRNA mRNA upstream 101316 1287645 ~ 1290193 (-) True CI01000040_01287654_01288940
CI01000040_01315704_01327557.mRNA mRNA upstream 128846 1315175 ~ 1327606 (-) True CI01000040_01315704_01327557
CI01000040_01354920_01371380.mRNA mRNA upstream 168522 1354851 ~ 1371380 (-) True CI01000040_01354920_01371380
CI01000040_01384014_01394577.mRNA mRNA upstream 197044 1383373 ~ 1394577 (-) True CI01000040_01384014_01394577
CI01000040_01396138_01397237.mRNA mRNA upstream 209204 1395533 ~ 1397237 (-) True CI01000040_01396138_01397237
TU208899 other downstream 326534 833140 ~ 833541 (-) True G183972
TU208782 other downstream 531381 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208367 other downstream 1109349 46627 ~ 50726 (-) True G183474
TU210608 other upstream 1408917 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 1409050 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 1805859 2992188 ~ 2992683 (-) True G185593
TU210881 other upstream 2158146 3344475 ~ 3344880 (-) True G185681
TU212605 other upstream 4077864 5264193 ~ 5286918 (-) True G187207

Expression Profile