RNA id: CI01000040_01287654_01288940.mRNA


Basic Information

Item Value
RNA id CI01000040_01287654_01288940.mRNA
length 2549
RNA type mRNA
GC content 0.44
exon number 1
gene id CI01000040_01287654_01288940
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1287645 ~ 1290193 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATCTTGCATACTACTGAAGTAGGAAATCTGTACTATAGACTGCATCAGTGTGTAGACTGTACTGTAAATAAAGATGTTCACTACAAACAGCATTCAAGAGACTGAGAAAAGACATTAAATACGTTAAACATGCCATTTTCGGTTCAACAGAAATGTAGAAATACACTATATTGCTAGAATAAGCTCACAAAGATATAATACACCTGATAGTAAACACACACATACAGTAAAGAAGTAAATAAACAGCGTTAGATTGCAGTGGTTAGTGTAGATAGAGTCCGTTGGGCTAAGCTAGAGAGTAACGTAGCGCTCGTGCTAGTCCTAATTCATTACAGACAAACCTGTAAAGACCGTGTACGTCCACCTAAGTGAAAACGGGTCTCCGGAAGTAAGAACTGACTTTAAAGGGTACTTACAGAAAATATGTCTACATCCGTGGCCGCCATGATGAGGAATGTCTGTGTTTGGATAAGGCGAAAGGGAGCTGCCTGCTTTCGTCTCACTCACCGTCCGCTGACACACACATACACACACAGCGGTTGGGCTGGAGAATTTACGAACGTTACTATGGTGAAGGCCTTGCTTATGAATTTAAATGACGCAATGTGACGTTCTGTTCTGATTGGCTGAAAGGCACGAGCGAGGAACGCTGAAAGGCTTGGCTTTTGAATATTAATTAGGTTACGTGACTTGAAGGATCAGAATGTTTACTTAGAAGCTCGAGATGGCGGAATTAATATTCATGAGACAATATTTTGCCATACTAGGATTCGTAATTTCGCAATATGGCTTCTTCCTGAAAACTCCCACTGGCTTCAGGAATGTCTTTTCTCAAGACATGGCAAGATAGAGCTTCTAAATAAAGAAATATGGAAGTAATTGTCAATTATGACATAACTGTACACATAACGTTCGTTCAAATACACTCACAGGGACAATTTGTTGATTTATTGAATTATGTTGTACTCATATGATTTTATTTTAAACCATTTAACAATTTAAAGGTAGCTAGCCAATATTTGGCTAGACTATGTCTTTTCTCCTTGACAAATTATGTTAAAATAAGCAAAACAAAATAATTTAGGAATCGGTTTTAAACTTTTCCACAGCCCCGCCCCCATCAACGTCTGATTTTTTTTACAAGAGGTCTAACGTGTTTCATTCCGGAAAACAGGTAAGGGCGTGGCGATCAGTCCAGGAGTAAACAGAGTCGTCCTGCTACAGTATGTTTATATCTAGGACGAGTTAAGAAATGGCTCTGACTCAAGAAGCGATTTTAAACACATTATTAGAAGGCAGAGGAAAGGTGAAAAACTCCGAGCTGCTGAGCAAGTTCAAAGATCGACTGAACTGCAGTGATCCGGCAGAGAAGAAGCAGAACCGAGATCTCTTCAAGACGTTTGTCAACAACGTTGGCGTTGTTAAAGAATTCCAGGATACCAAGTATATAGTCCTAAAGAAAGTATACCATCACCTACTTGAAGCCTCAAACAATGAGAACAAACAAAGAGAAGATAATGATCATGAAGGTGGATCACATCCAGAGGAAGATGAGAAGGAACAAAATGGAGAAGGTAAGAAGTCACTGAGCACTGAGGCTTCAGACGGCACCGCAGAACTTTCTCCCATAGAAGTTGCTTTGGAAAGAAGCAAGAATGTGGACTTTAAACCTAAAAAGTCTTTAAATTTCATTGTACCGCTTAAGTCTGACCCTGACTACTCTGATGACAAACATGGAGCGGCCAAGACAAACAAACCATTTGCGCTACCATTACGAATGCCCCAAACTGACATCAGCCAGCATCACAAGAAGAAGCTGTCCACTGCTGACTCTAAGAGAACGTCTATAGATGGTGTGACCCGCACTAGATACTTCAAGACCCCGAAACAGGCGGATGAGCCAAAGTACAACTCACACCATTGCCCGCTTGACCCCGCGGAGCACGAGTGGATGGTAAAGTCCGCGGCTGGACAGTGGAGTCAAGTGTACGGCCTTCTGTTGAAGGACGCTGAGCTCGCGGAGAAGAAAGACTTCATGTCTGGGTTCACGGCCCTACACTGGGCCGTCAAGTGTGGAAACATTGACATGGTCTGTATGATTATTGAGGTGTCTAGGAAGAACGGTCATGGGGTGGACGTTGACGCCAAGTCCAATGGCGGCTACACGCCACTACACATCGCCGCCATCCACAATCACGACTCTCTAATTGAACTTCTAGTCCAAAAGTATTGCGCCAATGGGAATCTAAGGGACAACTGCGGTAAGAAACCCTACCACTATCTGCGCAAAGGGGTTTCGAGACAGCTGAGGGAGCTTCTTGGAGACCCAAAAGCCGTCCAGCAGGAGGTTCATCAGGTCAGGGAGGACGGTGACCCGCATAGATACCCTAAAAGTCGTCTCTTCCCGACTCATCCGGTGGGGATCAAGAAAAAGAACAAGGGGAGAATCCAGTTCATGTCTTTGGCTGAAGACGTCAGAGCTGAGAGGGAAGAGCCGGCGTCGCATAAACAGAGGCTGGTGTCAGACGTCTTTCCATAACCGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209632 lncRNA downstream 2854 1281976 ~ 1284791 (-) True G184573
TU209631 lncRNA downstream 4378 1281976 ~ 1283267 (-) False G184573
TU209552 lncRNA downstream 32907 1254191 ~ 1254738 (-) True G184506
TU209543 lncRNA downstream 139363 1128537 ~ 1148282 (-) True G184497
TU209490 lncRNA downstream 301423 985862 ~ 986222 (-) True G184460
TU209646 lncRNA upstream 22720 1312913 ~ 1313434 (-) True G184587
TU209724 lncRNA upstream 272734 1562927 ~ 1563478 (-) False G184651
TU209725 lncRNA upstream 272734 1562927 ~ 1582846 (-) True G184651
TU209738 lncRNA upstream 291262 1581455 ~ 1581991 (-) True G184658
TU209744 lncRNA upstream 311627 1601820 ~ 1602075 (-) True G184664
CI01000040_01160713_01185710.mRNA mRNA downstream 101316 1160075 ~ 1186329 (-) True CI01000040_01160713_01185710
CI01000040_01150384_01152552.mRNA mRNA downstream 135093 1150035 ~ 1152552 (-) True CI01000040_01150384_01152552
CI01000040_01134768_01140438.mRNA mRNA downstream 146529 1134419 ~ 1141116 (-) True CI01000040_01134768_01140438
CI01000040_01002406_01015284.mRNA mRNA downstream 272361 1000722 ~ 1015284 (-) True CI01000040_01002406_01015284
CI01000040_00961941_00973627.mRNA mRNA downstream 314018 961941 ~ 973627 (-) True CI01000040_00961941_00973627
CI01000040_01315704_01327557.mRNA mRNA upstream 24982 1315175 ~ 1327606 (-) True CI01000040_01315704_01327557
CI01000040_01354920_01371380.mRNA mRNA upstream 64658 1354851 ~ 1371380 (-) True CI01000040_01354920_01371380
CI01000040_01384014_01394577.mRNA mRNA upstream 93180 1383373 ~ 1394577 (-) True CI01000040_01384014_01394577
CI01000040_01396138_01397237.mRNA mRNA upstream 105340 1395533 ~ 1397237 (-) True CI01000040_01396138_01397237
CI01000040_01418438_01423899.mRNA mRNA upstream 127859 1418052 ~ 1423899 (-) True CI01000040_01418438_01423899
TU208899 other downstream 454104 833140 ~ 833541 (-) True G183972
TU208782 other downstream 658951 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208367 other downstream 1236919 46627 ~ 50726 (-) True G183474
TU210608 other upstream 1305053 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 1305186 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 1701995 2992188 ~ 2992683 (-) True G185593
TU210881 other upstream 2054282 3344475 ~ 3344880 (-) True G185681
TU212605 other upstream 3974000 5264193 ~ 5286918 (-) True G187207

Expression Profile