RNA id: CI01000040_01490929_01498480.mRNA



Basic Information


Item Value
RNA id CI01000040_01490929_01498480.mRNA
length 433
RNA type mRNA
GC content 0.46
exon number 3
gene id CI01000040_01490929_01498480
representative True

Chromosome Information


Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1490894 ~ 1498497 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGATAAAAGCAGACTCAAACGGAAGTTGAACCCAAATGCGGGTTAATTTGTGCACAGTAAAACAGGATAACAATAGAACATCGGAGGAGGGGGTTCACAAAGGAGATCAGGAGAACAACAAAGGAGATCAACATGGGAATAGTTCTGGAGGAACAGGTAAGTACCAGGAGCTGAATTATCTCTCACTTCTGAGTGTAAATACGCAGCCTGCCTCCATAGTCTTCATGAGAGGAAACCATAGCAACGCCTCAACTATGCTGGTGGCAAGACACATTTACGTAATCTGTTCCCAGCGCTTCACCCTGGAGCGTGAATCAAACCCAGCATTCCCGTTTCAGATCTGTGGGAACAGGGCAGGGTTTAGGCTAAGCTCAGGACATAGTGGCTCTGTGATGAAGGGATATTCCAGAAAATAACTATGCTCAAGATACCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU209082 lncRNA upstream 50113 1440559 ~ 1440781 (+) True G184127
TU209079 lncRNA upstream 53601 1436940 ~ 1437293 (+) True G184124
TU209072 lncRNA upstream 65392 1425098 ~ 1425502 (+) True G184117
TU209067 lncRNA upstream 97352 1372172 ~ 1393542 (+) True G184112
TU208951 lncRNA upstream 102658 1348866 ~ 1388236 (+) True G184009
TU209128 lncRNA downstream 25736 1524233 ~ 1530255 (+) True G184161
TU209182 lncRNA downstream 95812 1594309 ~ 1594820 (+) True G184194
TU209187 lncRNA downstream 102499 1600996 ~ 1601249 (+) True G184198
TU209188 lncRNA downstream 103217 1601714 ~ 1601944 (+) True G184199
TU209175 lncRNA downstream 124052 1622549 ~ 1634932 (+) True G184187
CI01000040_01454703_01458555.mRNA mRNA upstream 31611 1454703 ~ 1459283 (+) True CI01000040_01454703_01458555
CI01000040_01399805_01411103.mRNA mRNA upstream 79219 1399805 ~ 1411675 (+) True CI01000040_01399805_01411103
CI01000040_01332036_01345122.mRNA mRNA upstream 145738 1332036 ~ 1345156 (+) True CI01000040_01332036_01345122
CI01000040_01296612_01311591.mRNA mRNA upstream 179273 1296612 ~ 1311621 (+) True CI01000040_01296612_01311591
CI01000040_01267267_01282224.mRNA mRNA upstream 208459 1267267 ~ 1282435 (+) True CI01000040_01267267_01282224
CI01000040_01535182_01539109.mRNA mRNA downstream 36603 1535100 ~ 1539460 (+) True CI01000040_01535182_01539109
CI01000040_01539717_01540595.mRNA mRNA downstream 41093 1539590 ~ 1540649 (+) True CI01000040_01539717_01540595
CI01000040_01540821_01545220.mRNA mRNA downstream 42257 1540754 ~ 1545260 (+) True CI01000040_01540821_01545220
CI01000040_01553258_01557964.mRNA mRNA downstream 54761 1553258 ~ 1560167 (+) True CI01000040_01553258_01557964
CI01000040_01579092_01597460.mRNA mRNA downstream 80515 1579012 ~ 1598480 (+) True CI01000040_01579092_01597460
TU208940 other upstream 254405 1230292 ~ 1236489 (+) True G184003
TU208979 other upstream 512731 974113 ~ 974246 (+) True G184034
TU208290 other upstream 1214039 197712 ~ 276855 (+) True G183418
TU208294 other upstream 1325972 157543 ~ 164922 (+) True G183420
TU208230 other upstream 1430497 53691 ~ 60397 (+) True G183366
TU210451 other downstream 1835081 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 2240490 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 2475268 3973765 ~ 3974123 (+) True G185947
TU212953 other downstream 4470548 5969045 ~ 5971732 (+) False G187510
TU212954 other downstream 4470548 5969045 ~ 5971732 (+) False G187510

Expression Profile