RNA id: TCONS_00000014


Basic Information

Item Value
RNA id TCONS_00000014
length 446
lncRNA type retained_intron
GC content 0.56
exon number 4
gene id XLOC_000004
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 27690 ~ 34330 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGATGTCTGAACCTCACGGCGAGGCGGGAAACGAGATGCCGAACAAAAAGCAGAAACTGAGCAGCGACGAGAACAGCAACCCCGACCTGTCTGGAGACGACAATgatgaTGCGGTCAGCGTGGAGAGCGGCACACACCCCGAGCGTCCCGACACTCCCACCAACACAGCGAGCGCTCCGGGCAGGAAGAGCTGGGGGAAGGGGAAGTGGAAGTCCAAGAAGTGCAAATACTCCTTCAAGTGTGTGAACAGCCTAAAGgaggatCATGGTCAGCCGCTGTTTGGAGTTCAGTTCAACTGGCACAGCAAAGAAGGAGATCCGCTGGTGTTCGCTACTGTGGGCAGCAACAGAGTCACGCTGTACGAGTGTCATTCTCAGGGAGAGATCCGGCTGCTGCAGTCCTACGTGGACGCTGATGTATCCTTCataaggagtgtgtgtgtg

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006342 chromatin silencing biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0016571 histone methylation biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0046976 histone methyltransferase activity (H3-K27 specific) molecular_function
GO:0042054 histone methyltransferase activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050417-287 Predicted to contribute to histone methyltransferase activity (H3-K27 specific) and nucleosome binding activity. Predicted to be involved in chromatin silencing and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone methylation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in several structures, including eye; gonad; heart; intestine; and midbrain hindbrain boundary. Orthologous to human EED (embryonic ectoderm development).

Ensembl:

ensembl_id ENSDART00000161955

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003000 lncRNA upstream 7518 18716 ~ 20331 (+) False XLOC_000002
TCONS_00000009 lncRNA upstream 7518 18747 ~ 20331 (+) False XLOC_000002
TCONS_00000007 lncRNA upstream 7886 18716 ~ 19963 (+) False XLOC_000002
TCONS_00000004 lncRNA upstream 12786 14167 ~ 15063 (+) False XLOC_000001
TCONS_00000015 lncRNA downstream 466 31787 ~ 32353 (+) True XLOC_000004
TCONS_00000017 lncRNA downstream 5406 36727 ~ 38446 (+) True XLOC_000005
TCONS_00000021 lncRNA downstream 95945 127266 ~ 133215 (+) False XLOC_000008
TCONS_00000022 lncRNA downstream 95979 127300 ~ 129591 (+) False XLOC_000008
TCONS_00000023 lncRNA downstream 99306 130627 ~ 131221 (+) True XLOC_000008
TCONS_00000011 mRNA upstream 594 25585 ~ 27255 (+) True XLOC_000003
TCONS_00000008 mRNA upstream 4460 18716 ~ 23389 (+) False XLOC_000002
TCONS_00000010 mRNA upstream 4676 18786 ~ 23173 (+) True XLOC_000002
TCONS_00000006 mRNA upstream 11577 15062 ~ 16272 (+) True XLOC_000001
TCONS_00000002 mRNA upstream 13791 11992 ~ 14058 (+) False XLOC_000001
TCONS_00000016 mRNA downstream 5231 36552 ~ 39191 (+) False XLOC_000005
TCONS_00000018 mRNA downstream 78477 109798 ~ 119146 (+) True XLOC_000006
TCONS_00000019 mRNA downstream 88639 119960 ~ 125246 (+) True XLOC_000007
TCONS_00000020 mRNA downstream 95929 127250 ~ 134079 (+) False XLOC_000008
TCONS_00000024 mRNA downstream 104582 135903 ~ 142469 (+) True XLOC_000009
TCONS_00000003 other upstream 14592 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 228719 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 482692 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 506268 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 545123 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 1187370 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

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