RNA id: TU208230


Basic Information

Item Value
RNA id TU208230
length 362
RNA type TUCP
GC content 0.43
exon number 2
gene id G183366
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 53691 ~ 60397 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGCTTGCTATCTGGGTATGCTCAATTTATGTATGAGAGGAGTAATTCACAATTAAAAAAGTACATTTACCTTAAAGTATACAGTATCCGCCCATCGTTCCATATCCGAAGCATCCGATTGGGTGTGGTGATCCAATGGGCATCTGCCTTCTTGGAGTTGCGGAAAAATGTGTCAGGGATCCAGATTTTTCCTACCATGTTGCTGTTGAGACGTAGAACTTTCATAGTGCTGTTAAACTTCAACCGCCTGTCATACCACGTCTGGGCGAAGAAGATGTCAATAGTGTACTCCATGTTGATGGCATTTACTGGGCCAATACTGTTGACAAACATGTCTGTATGGATCACGGTTGGTTTGACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208238 lncRNA upstream 5415 19599 ~ 48276 (+) True G183370
TU208254 lncRNA downstream 17951 78348 ~ 81976 (+) True G183386
TU208293 lncRNA downstream 71385 131782 ~ 178924 (+) False G183419
TU208292 lncRNA downstream 77971 138368 ~ 157294 (+) True G183419
TU208307 lncRNA downstream 110912 171309 ~ 173835 (+) False G183433
TU208308 lncRNA downstream 110912 171309 ~ 173835 (+) True G183433
CI01000040_00178642_00181455.mRNA mRNA downstream 118207 178604 ~ 182191 (+) False CI01000040_00178642_00181455
CI01000040_00240852_00305487.mRNA mRNA downstream 180455 240852 ~ 305487 (+) False CI01000040_00240852_00305487
CI01000040_00347516_00350540.mRNA mRNA downstream 287119 347516 ~ 350601 (+) True CI01000040_00347516_00350540
CI01000040_00366809_00384965.mRNA mRNA downstream 306312 366709 ~ 385259 (+) True CI01000040_00366809_00384965
CI01000040_00512880_00513451.mRNA mRNA downstream 452483 512880 ~ 513597 (+) True CI01000040_00512880_00513451
TU208294 other downstream 97146 157543 ~ 164922 (+) True G183420
TU208290 other downstream 137315 197712 ~ 276855 (+) True G183418
TU208979 other downstream 913716 974113 ~ 974246 (+) True G184034
TU208940 other downstream 1169895 1230292 ~ 1236489 (+) True G184003
TU210451 other downstream 3273181 3333578 ~ 3333983 (+) True G185296

Expression Profile