RNA id: TU208293


Basic Information

Item Value
RNA id TU208293
length 3356
lncRNA type read_through
GC content 0.36
exon number 4
gene id G183419
representative False

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 131782 ~ 178924 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATATTCTCTTGTTTAAATTAGTTTTATACCAGAGAATATTATTCCATCCGCAATTAATATCACAATTTTCATCCTAATCAAATGGATTTAATGGCACAATCATGAATTGCAGGTAAAGTCCACAATGCATTGTTTTTTTCTGTTTATCTTTAAGTTGCTGAATGAAACAGTCTTGTTGCAACTAGGTTCATGAAAAAATACAATGGAACAACAAACATCACAATTTCAGAATTTAAAGAAAAAAAGTTTCATGTTAAAATAAATTTAATCTTTTTACATACTGCAACAGCATGTACAATAACAGTCTACATGCTATGTAATCAGGGCTTGTCATAGAATACCTGTAACAAAAAGGCTTTAATATAATTAACATTTGACAACATATTACATAAGCATACTAAAATTTATTTTATTGTGAAAAGACAACAACTTTACAATCAATCAGAAAGGGAAAACACATTAAAAGCTCTCATTTATTAAATAACAAAATAAACATGTTTAGTGAAAAATAAAACTCTTAGCTCAAAGAGGGACAAAAAGCTAAAATAGCTGTCATAAAAGTCAAGCATCACATGGAGACATCAGTGATGTCATATGTTGTACAGAGGGATTAGTGTGTATATATAATGTTGTGCTTATAACGTTATTTCTGCATTTGCTTAATAGCGACAGGCTCAAAACTCAACAATGATTGCTTTAAGCAATGGGAGTGAGAAGGTGCATGTGTGAGCATGTTTCTGCATGTTTCTGCTTTTGTCTGTGTTTTTTGCTCTATTCTTGACTTTTATAGTTTATTGTTTGTAGAGATTAACATAGGGTTCTGTTAAGTAGCGTGTCTTGCTTTGCACGGTTCACCTGGCATTAGCTATGGTGTCCGCATTGCCAGGTGGAAGGACACCATTATCTCTCCACAATGGTTTCAGGTGCATGCCAGAGGCGAGTGCTACAATTGAAGATGTTCTGTTAGCGGTTTGTGAGCAGATAAAACATGAAAATATCCTTTCGGCTTCAAGAATGAACAAAGCTGTAGTTGTTTTTCTCCAAACAGAAACATTGGTCAACAAGGTTAATGAAAACGGTTTGTAGGTGAAAGAAACTTTAGTTAACTCTACTCTGCTGTTTGCACCGGCAACAAAAGTGATCATTTCAAACGTCACTCCGTTTATTAAAAATAAAGCTATAGTGAGAGAACTTGCAAGATTTGGAAAAGTTGTAAGCATGGTTAAAACATTATTTCTAGGATGAAAAAATCCTGTGCTTAGACATGTGATGTCTTTTAGGAGACACGTGTTCATGTTCCTGAACTCTCCGGATAAATTGTTGGATGTTGAATTGTTGGAACCTATTAGTAGTGAGGTGGGTGGATCATTGGTGCATAAGGATATGGAGGTCAAACAGAAACCAGGAGAGGAGAAGTCAGGCTTGGATGGAGATCGAGAACGAGTAAGGACATTGGACTGGGGGTGAGTAACTTAAACAAAAAGCCTAGTTGTAGCAGTGTAAATGGTACTGATGTGGTAAAACAGCAACTTATAGCTAATGATGTAGGCCTACATGTCAGTGGTGTGCAAGCAAGGAGGAGAATGATGAGGTTTCTGACATTATGACGCAGAGTCAGAATTAAATGAAGGATGACGAGAGTTTGTAAGATATGTCAGAACTCTATAGAGCTAATGATGACTTGTATTCTGTAGAACGGACAAATGATTTTTTGGACGAGACTAAAGGGAAAAATAAATATAGGGGATTTTTTTCTTCTGTAGTGTGGGCACGTAAAACATACAATCATACTGTTATCACAGCAGAAACGGTTCAGACTTAAGAAGTTTATAATGCCAATAAGGCAGGGTAAAAAGAATGTGAATGAAAGGAAAACCAGAGGAAAAGCTAAATAAACATTATGGCTTTACGCATGTATCTGAGGGATATGAAAAAGCTTAAAATATTAATATTAAGAATACTGCAGTAGGTTTTCTTCAAGAAAATCATAGTATTATGAGCAATGTGTTTGAAAGGGGATTGTGGTGGAAGGGAGAATATGTTTATGTCGTGTTTAAGTGTAAGTCATGGCTCTAATGTGTAGGAGTTGCGATCTTGTTTAATTCAACTTTGAAAGCAAAAATCTTATGTAGATATGATGTAGGACCTGGGAGATTACGTTTAGTAAGAGCTGAAAGATATAATTTTCATTTTCTTTTTGTTAATATGTATGCCCCTAATGGGCCTGTAGAAATCCCTGAGCCAAGAGGCCTGTGTAGACCTTAATCCACCCTGCAGGTCAGCATTGGCCGAGACCAGCGGTACTTTACCTGCCTCTTCATGAAGGGGCCAAGGATTAATTGATAAAGGATGTAGGATTGCTGCTTTTAGGCTACAAGCTGCTCAGAGGCTTTTGTATGAGAAGGATGTTAGTTGGGCTGATGTGGCTTGTGGTCTTTTGAGGAGAGGAGGACTACTGAGACTGGATCGGCAATTGTTTTTAATGAATTTAAATGATGTAGAACGATGTTGAATTAACACCTTTTTATAAGGCAGTTCTAAAATCATGGAATGTTTTGGGAATTGTTCGAGAATAAGGTATTGTAAGTGGATCATGGATCAAAGAGGAACCTCTTCTTTACAATACTGCATTAACTATAAAAATCTTGAACTCTCATTCAATGCAGGCTGCTGTGGTGGAAGCCCAGTTCAGAAAAGTCCCACATTTCTGGAGTAAAGGTGAATGGTTGTCTTTGAGGGATATTTTAGTAAACTTGGGTAGTAAGTCACTCCGTGTTGTAGAAAGATTAAAGGTATCTGTATACCATCAATATTTTCAGAGTTGTTGAATCAGGAAGAAACAAAACAATATTGTATTAATGAGATAAATGAGTTTCCGAGTTTAGGGGTAAGGGCAGCAGTGGAGACATGGCCGGGGATGAAAGAAAGTTGTTGAGTTTTAAAACTCCAGAACTTAATTTGTTTTGTAATACTGGAAAGAGAGCACTGTAGTATACTTGTGATGCATTTTGAATCATTAAAATGTGTTTCAGACTCTAAATGGAAAGGATTAGTGGGGTTTGATGTATCTCCTAAAGGTAGCTGGATGACTTTGTATAAACTCCCTATTGATAAGAGAACTGGTGACCTCCAATGGCAGATAATACACTGAGCAATAACTATTAATAGACATAGGGCACACATTGATGCAACAGTAAGGGAAGTAGGTCCATTTTGTTTTTAGTTTGAAGATATGTATCTCTTTTTCTTACAGTGCAAAAGGTTGAAGCCTATTTTTCAATTATTGGATAGAGTTAAAAAAAAAAAAAGAAAATAATTTTGAATTTACATTAAATGTTTTTTTTTTTTTTTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208254 lncRNA upstream 49806 78348 ~ 81976 (+) True G183386
TU208238 lncRNA upstream 83506 19599 ~ 48276 (+) True G183370
TU208313 lncRNA downstream 3204 182128 ~ 182404 (+) True CI01000040_00178642_00181455
TU208314 lncRNA downstream 3543 182467 ~ 182743 (+) True G183438
TU208316 lncRNA downstream 9538 188462 ~ 188747 (+) True G183440
TU208295 lncRNA downstream 22128 201052 ~ 253362 (+) True G183421
TU208291 lncRNA downstream 115933 294857 ~ 313275 (+) True CI01000040_00240852_00305487
CI01000040_00240852_00305487.mRNA mRNA downstream 61928 240852 ~ 305487 (+) False CI01000040_00240852_00305487
CI01000040_00347516_00350540.mRNA mRNA downstream 168592 347516 ~ 350601 (+) True CI01000040_00347516_00350540
CI01000040_00366809_00384965.mRNA mRNA downstream 187785 366709 ~ 385259 (+) True CI01000040_00366809_00384965
CI01000040_00512880_00513451.mRNA mRNA downstream 333956 512880 ~ 513597 (+) True CI01000040_00512880_00513451
CI01000040_00554753_00561571.mRNA mRNA downstream 375829 554753 ~ 562993 (+) True CI01000040_00554753_00561571
TU208230 other upstream 71385 53691 ~ 60397 (+) True G183366
TU208290 other downstream 18788 197712 ~ 276855 (+) True G183418
TU208979 other downstream 795189 974113 ~ 974246 (+) True G184034
TU208940 other downstream 1051368 1230292 ~ 1236489 (+) True G184003
TU210451 other downstream 3154654 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 3560063 3738987 ~ 3739281 (+) True G185884

Expression Profile