RNA id: TU208393


Basic Information

Item Value
RNA id TU208393
length 245
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G183500
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 188416 ~ 188660 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGCATTGCACTTGGTGATGTAAGGCTTGGATGCAGCTGCTCGGCCATGGAAACCCATTCCATGAAGCTCTCTACGCACTGTTCTTGAGCTAATCTGAAGGCCACACAAAGTTTGGAGGTCTGTAGCTATTGACTCTGCAGAAAGTTGGCAACTTCTGTGCACTGTGCGCCTCAGCATGCACTGACCCCGCTCTGTGATTTTACATGGCCTACCACTTTGTGGCTGAGTTGCTGTTGTTCCCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208369 lncRNA downstream 72322 115868 ~ 116094 (-) True G183476
TU208368 lncRNA downstream 101327 82889 ~ 87089 (-) True G183475
TU208395 lncRNA upstream 2501 191161 ~ 191518 (-) True G183502
TU208402 lncRNA upstream 8756 197416 ~ 313352 (-) False G183508
TU208401 lncRNA upstream 116392 305052 ~ 313352 (-) True G183508
TU208494 lncRNA upstream 155672 344332 ~ 346939 (-) True G183598
TU208541 lncRNA upstream 191936 380596 ~ 397197 (-) True G183641
CI01000040_00153873_00173202.mRNA mRNA downstream 15214 153873 ~ 173202 (-) True CI01000040_00153873_00173202
CI01000040_00081665_00111856.mRNA mRNA downstream 76222 80979 ~ 112194 (-) True CI01000040_00081665_00111856
CI01000040_00002763_00060396.mRNA mRNA downstream 128020 2763 ~ 60396 (-) True CI01000040_00002763_00060396
CI01000040_00413047_00426023.mRNA mRNA upstream 224345 413005 ~ 427064 (-) False CI01000040_00413047_00426023
CI01000040_00569008_00598590.mRNA mRNA upstream 380100 568760 ~ 598590 (-) True CI01000040_00569008_00598590
CI01000040_00623449_00625433.mRNA mRNA upstream 434763 623423 ~ 626036 (-) True CI01000040_00623449_00625433
CI01000040_00626750_00628543.mRNA mRNA upstream 437821 626481 ~ 628559 (-) False CI01000040_00626750_00628543
CI01000040_00701332_00746419.mRNA mRNA upstream 512173 700833 ~ 746964 (-) True CI01000040_00701332_00746419
TU208367 other downstream 137690 46627 ~ 50726 (-) True G183474
TU208782 other upstream 437172 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208899 other upstream 644480 833140 ~ 833541 (-) True G183972
TU210608 other upstream 2406586 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 2406719 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 2803528 2992188 ~ 2992683 (-) True G185593

Expression Profile