RNA id: TU208804


Basic Information

Item Value
RNA id TU208804
length 240
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G183880
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 564907 ~ 565146 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTTCTATTTCCCAGCATGCTTTGCCCATGGCACTCGAAAGAGAGAGTAAATGCTAAAATTAAGTGTTATATAATGTTTTTTGTGCAAGACTAATGTTTAGTGGGAGATTTAGTAGTGATTAATGTTTTGTTATGCTAATTTAGGAGAGTTTATTTTAATGTGGGTTTTTGGAAAGGGTTAGTTCACCCAAAAATGAAAATTTAAAGCATTTGACATACTTGCTCTCAAACCAAGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208803 lncRNA downstream 21 564654 ~ 564886 (-) True G183879
TU208626 lncRNA downstream 84250 480455 ~ 480657 (-) True G183726
TU208625 lncRNA downstream 84531 480155 ~ 480376 (-) True G183725
TU208622 lncRNA downstream 88656 475918 ~ 476251 (-) True G183722
TU208611 lncRNA downstream 110113 454478 ~ 454794 (-) True G183711
TU208805 lncRNA upstream 40 565186 ~ 565408 (-) True G183881
TU208821 lncRNA upstream 69833 634979 ~ 635312 (-) True G183897
TU208831 lncRNA upstream 82168 647314 ~ 647585 (-) True G183906
TU208832 lncRNA upstream 83496 648642 ~ 648923 (-) True G183907
TU208833 lncRNA upstream 85761 650907 ~ 651159 (-) True G183908
CI01000040_00413047_00426023.mRNA mRNA downstream 137843 413005 ~ 427064 (-) False CI01000040_00413047_00426023
CI01000040_00153873_00173202.mRNA mRNA downstream 391705 153873 ~ 173202 (-) True CI01000040_00153873_00173202
CI01000040_00081665_00111856.mRNA mRNA downstream 452713 80979 ~ 112194 (-) True CI01000040_00081665_00111856
CI01000040_00002763_00060396.mRNA mRNA downstream 504511 2763 ~ 60396 (-) True CI01000040_00002763_00060396
CI01000040_00569008_00598590.mRNA mRNA upstream 3614 568760 ~ 598590 (-) True CI01000040_00569008_00598590
CI01000040_00623449_00625433.mRNA mRNA upstream 58277 623423 ~ 626036 (-) True CI01000040_00623449_00625433
CI01000040_00626750_00628543.mRNA mRNA upstream 61335 626481 ~ 628559 (-) False CI01000040_00626750_00628543
CI01000040_00701332_00746419.mRNA mRNA upstream 135687 700833 ~ 746964 (-) True CI01000040_00701332_00746419
CI01000040_00760116_00779888.mRNA mRNA upstream 194970 760116 ~ 780882 (-) True CI01000040_00760116_00779888
TU208367 other downstream 514181 46627 ~ 50726 (-) True G183474
TU208782 other upstream 60686 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208899 other upstream 267994 833140 ~ 833541 (-) True G183972
TU210608 other upstream 2030100 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 2030233 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 2427042 2992188 ~ 2992683 (-) True G185593

Expression Profile