RNA id: TU208831


Basic Information

Item Value
RNA id TU208831
length 272
lncRNA type intronic
GC content 0.51
exon number 1
gene id G183906
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 647314 ~ 647585 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATGCTCTTCACATCCACTTGCACAGAGAGCTTCAGATGCTCTGAGCAGCTCTTTGTCTGTTTTGGGGGTAAGAAGGCTGTCTCCAAACAGAGGATTTCCCACTGGATGCTATTTTTCTGGCATACCAAACCCAGGGTGTGCCGTGCCCCCCTGAGGTGATAACACAGATTCATTATTGGCCGGCTCCTATGTCAGCATCAGATGCATGCATCGTGGTGCTCATGTGTTCAGCTTCGGCCAATACTGAGTCGGCGTTCGGACGTAAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208821 lncRNA downstream 12002 634979 ~ 635312 (-) True G183897
TU208805 lncRNA downstream 81906 565186 ~ 565408 (-) True G183881
TU208804 lncRNA downstream 82168 564907 ~ 565146 (-) True G183880
TU208803 lncRNA downstream 82428 564654 ~ 564886 (-) True G183879
TU208626 lncRNA downstream 166657 480455 ~ 480657 (-) True G183726
TU208832 lncRNA upstream 1057 648642 ~ 648923 (-) True G183907
TU208833 lncRNA upstream 3322 650907 ~ 651159 (-) True G183908
TU208839 lncRNA upstream 12765 660350 ~ 661056 (-) True G183913
TU208842 lncRNA upstream 18839 666424 ~ 666767 (-) True G183916
TU208844 lncRNA upstream 20738 668323 ~ 668571 (-) True G183918
CI01000040_00626750_00628543.mRNA mRNA downstream 18755 626481 ~ 628559 (-) False CI01000040_00626750_00628543
CI01000040_00623449_00625433.mRNA mRNA downstream 21278 623423 ~ 626036 (-) True CI01000040_00623449_00625433
CI01000040_00569008_00598590.mRNA mRNA downstream 48724 568760 ~ 598590 (-) True CI01000040_00569008_00598590
CI01000040_00413047_00426023.mRNA mRNA downstream 220250 413005 ~ 427064 (-) False CI01000040_00413047_00426023
CI01000040_00153873_00173202.mRNA mRNA downstream 474112 153873 ~ 173202 (-) True CI01000040_00153873_00173202
CI01000040_00701332_00746419.mRNA mRNA upstream 53248 700833 ~ 746964 (-) True CI01000040_00701332_00746419
CI01000040_00760116_00779888.mRNA mRNA upstream 112531 760116 ~ 780882 (-) True CI01000040_00760116_00779888
CI01000040_00795062_00809762.mRNA mRNA upstream 147352 794937 ~ 809762 (-) True CI01000040_00795062_00809762
CI01000040_00810717_00829640.mRNA mRNA upstream 162824 810409 ~ 829640 (-) True CI01000040_00810717_00829640
CI01000040_00837863_00839807.mRNA mRNA upstream 189878 837463 ~ 839807 (-) True CI01000040_00837863_00839807
TU208782 other downstream 18620 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208367 other downstream 596588 46627 ~ 50726 (-) True G183474
TU208899 other upstream 185555 833140 ~ 833541 (-) True G183972
TU210608 other upstream 1947661 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 1947794 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 2344603 2992188 ~ 2992683 (-) True G185593
TU210881 other upstream 2696890 3344475 ~ 3344880 (-) True G185681

Expression Profile