RNA id: TU208839


Basic Information

Item Value
RNA id TU208839
length 707
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G183913
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 660350 ~ 661056 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACGTGTCTGTGTAATTTATGTTGCAATATTAACTCAACAGCTCTATTGTCAGTATAAGCAAACCAGGCCACACAAGGCAACATAAAGAACAGTAAATCTGCATCTGACTAATATCTTTGCATGTGTGTACATTTGAGCCACTTGGAAAAACCATTTTGCCTGTTTCTTTTTTTTTTTTACTGGATGTGCAAAACCATTATGTAGTTTACATGCAGTCATTACCTGTGGATGATGTGCTTGTTGCGCAAGTAGTGCAAAGCCAGGGCGATTTCACACACGTAGTGCTTCACTGTACTCTCTGTAAAGTGCACATTCTGTTGTAGATGGTAACGTAGATCTCCTCCCAGCAGCAGGTCAACCACCATGAACATGTCCTCTTCATCTTGAAACGAGTACCTGCATTAGACAAATTATGACAGTGTTCAGTAACACTTTACTATAAGGTCTCATTTGTTAACAGTTAATGTATTAACTAACATGAGATAACCATGAACAATACATTTGTTACAGTATTTATTAATCTTTGTTAATGTTATGGTGCTTTTCCACTGCGTGGTACCACTCGGCTCAGCTCAGTTTGGTTTGGCACGGCTTGGCGCGCTTTACTTTCAGTTTGCTTTTCCACTGCAGTTTAGTACCGCTTCAATGTGGGTGGGATTATTGACCGATCGTATAGTTGCACCACCTCTACTGCCGTGGATGCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208833 lncRNA downstream 9191 650907 ~ 651159 (-) True G183908
TU208832 lncRNA downstream 11427 648642 ~ 648923 (-) True G183907
TU208831 lncRNA downstream 12765 647314 ~ 647585 (-) True G183906
TU208821 lncRNA downstream 25038 634979 ~ 635312 (-) True G183897
TU208805 lncRNA downstream 94942 565186 ~ 565408 (-) True G183881
TU208842 lncRNA upstream 5368 666424 ~ 666767 (-) True G183916
TU208844 lncRNA upstream 7267 668323 ~ 668571 (-) True G183918
TU208845 lncRNA upstream 9286 670342 ~ 670702 (-) True G183919
TU208846 lncRNA upstream 11182 672238 ~ 672440 (-) True G183920
TU208848 lncRNA upstream 14115 675171 ~ 675383 (-) True G183922
CI01000040_00626750_00628543.mRNA mRNA downstream 31791 626481 ~ 628559 (-) False CI01000040_00626750_00628543
CI01000040_00623449_00625433.mRNA mRNA downstream 34314 623423 ~ 626036 (-) True CI01000040_00623449_00625433
CI01000040_00569008_00598590.mRNA mRNA downstream 61760 568760 ~ 598590 (-) True CI01000040_00569008_00598590
CI01000040_00413047_00426023.mRNA mRNA downstream 233286 413005 ~ 427064 (-) False CI01000040_00413047_00426023
CI01000040_00153873_00173202.mRNA mRNA downstream 487148 153873 ~ 173202 (-) True CI01000040_00153873_00173202
CI01000040_00701332_00746419.mRNA mRNA upstream 39777 700833 ~ 746964 (-) True CI01000040_00701332_00746419
CI01000040_00760116_00779888.mRNA mRNA upstream 99060 760116 ~ 780882 (-) True CI01000040_00760116_00779888
CI01000040_00795062_00809762.mRNA mRNA upstream 133881 794937 ~ 809762 (-) True CI01000040_00795062_00809762
CI01000040_00810717_00829640.mRNA mRNA upstream 149353 810409 ~ 829640 (-) True CI01000040_00810717_00829640
CI01000040_00837863_00839807.mRNA mRNA upstream 176407 837463 ~ 839807 (-) True CI01000040_00837863_00839807
TU208782 other downstream 31656 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208367 other downstream 609624 46627 ~ 50726 (-) True G183474
TU208899 other upstream 172084 833140 ~ 833541 (-) True G183972
TU210608 other upstream 1934190 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 1934323 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 2331132 2992188 ~ 2992683 (-) True G185593
TU210881 other upstream 2683419 3344475 ~ 3344880 (-) True G185681

Expression Profile