RNA id: TU208858


Basic Information

Item Value
RNA id TU208858
length 942
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G183932
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 688035 ~ 688976 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTCACTGACTCACTCACTCACTTACTGACTCATTAACTCACTCACTCACTGACTCACTCACTCACTCACTGACTCACTCACTAACTCACTGACTCACTCACTCACTGACTCATTCACTCACTGACTCATTCACTGACTCACTCACTCACTAACTTACATGCACACTCATACCCCTTGTGAAAAAGAAGTATACTTTAGCATACTTTTAAAAAGAGTACTTATTACCGAAATAATATACTTTAAAAGATCATACTTCAGTGTGAACTGTGAGTAAATCTTTTCCAGAAAGTTTGCTTTGGCAAGCTGTTTGAACTCCTGAAAAGAACACCAAACAAACTTCGTTTTGGCATGATTTTGTTCAAAATGATGTCACACTAGTTCGTTCTTCGATTTCGCTTGAAGTATATCGGGGCCTTAACCTTTTAGTAAGTACATGTATAGTTAATTATTATTACTCAGTACTTAAATGTATAATTACACTGTAACATGGCCATCTTAAAATAAAGCGTATCAGAGTAATTAAATCAGTTCTGCAAAACTTCTCATTAGAAAACTTCATGTTTCTAAAGGTCAACAATTCTTATCTCCCACTGCACAAATCCTTCAGAGAAATGACTCATACAGACAAACAAAGAACAGAGTCATTGCAGAAAAACTTAGGTAATATGTTAATGAGGTAATATGTTAATGCAATAAACAAGAATTTAATTGTTTTATGTCTTTTTGCAGTTATGCAAGTTGTTGCATAACCACATTCGACAGTGACAGTGTTAACAAGTGTTACTGAACCTGGGTTCAGCATGGGTTCTTACCAAAGTCTGTGCTGTGATTATTATGTTCTGAAGTAATAACTGTAATACGAGAAAGAGAAGATGAAAAAGGTTACTCTTAGAGAGATGCTACCTGAGGAGATCCATCAGAGCCATTCTCCTTCGTCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208857 lncRNA downstream 4019 683750 ~ 684016 (-) True G183931
TU208855 lncRNA downstream 6308 681437 ~ 681727 (-) True G183929
TU208850 lncRNA downstream 9841 677911 ~ 678194 (-) True G183924
TU208849 lncRNA downstream 11996 675739 ~ 676039 (-) True G183923
TU208848 lncRNA downstream 12652 675171 ~ 675383 (-) True G183922
TU208829 lncRNA upstream 7526 696502 ~ 697701 (-) True G183904
TU208830 lncRNA upstream 9403 698379 ~ 699357 (-) True G183905
TU208864 lncRNA upstream 24140 713116 ~ 726854 (-) True G183937
TU208871 lncRNA upstream 51006 739982 ~ 740212 (-) True G183944
TU208883 lncRNA upstream 105482 794458 ~ 794721 (-) True G183956
CI01000040_00626750_00628543.mRNA mRNA downstream 59476 626481 ~ 628559 (-) False CI01000040_00626750_00628543
CI01000040_00623449_00625433.mRNA mRNA downstream 61999 623423 ~ 626036 (-) True CI01000040_00623449_00625433
CI01000040_00569008_00598590.mRNA mRNA downstream 89445 568760 ~ 598590 (-) True CI01000040_00569008_00598590
CI01000040_00413047_00426023.mRNA mRNA downstream 260971 413005 ~ 427064 (-) False CI01000040_00413047_00426023
CI01000040_00153873_00173202.mRNA mRNA downstream 514833 153873 ~ 173202 (-) True CI01000040_00153873_00173202
CI01000040_00701332_00746419.mRNA mRNA upstream 11857 700833 ~ 746964 (-) True CI01000040_00701332_00746419
CI01000040_00760116_00779888.mRNA mRNA upstream 71140 760116 ~ 780882 (-) True CI01000040_00760116_00779888
CI01000040_00795062_00809762.mRNA mRNA upstream 105961 794937 ~ 809762 (-) True CI01000040_00795062_00809762
CI01000040_00810717_00829640.mRNA mRNA upstream 121433 810409 ~ 829640 (-) True CI01000040_00810717_00829640
CI01000040_00837863_00839807.mRNA mRNA upstream 148487 837463 ~ 839807 (-) True CI01000040_00837863_00839807
TU208782 other downstream 59341 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208367 other downstream 637309 46627 ~ 50726 (-) True G183474
TU208899 other upstream 144164 833140 ~ 833541 (-) True G183972
TU210608 other upstream 1906270 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 1906403 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 2303212 2992188 ~ 2992683 (-) True G185593
TU210881 other upstream 2655499 3344475 ~ 3344880 (-) True G185681

Expression Profile