RNA id: TU208830


Basic Information

Item Value
RNA id TU208830
length 979
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G183905
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 698379 ~ 699357 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAATATCATTCGTATTTGGGTCATTGACGAATAAGGTTTTTAAAAGTAAAAAAACCTAATGGAGATATAATTAAATGTGAAGATTTATTAAGTGTTAACAATGAGATTTGTGGTTTTTATAATCAATTAACACTGCTTTTGTCAATATGGACAAATTTGTCACCAAAAAAGTCATTCGGTTTAACCAAAATTTTGGTTTTACCGAATGACAGTTTTGGTTATACCGATTGACGATATTTTCAAACAATGTTAAGAGGCTGATATCTAGCTATCTAGCAAAAGAACAATCAAACATTTTATATTTAGTACAAGTTTTTAAAATATTTCCATGTTTTATAGCGGTTGTACCGAATGACCTGATGTTTCGGGACATGCGTATGAACAAGTGAAAACATGAATTTTTCAAATAGTTAAGAGAGAGTTCGTTACTTTGCTTCACGACCATGTGGTCCTTTGCAGGTGTCTGAATGATGTCACATGATACTGACCACATGACTTGATCCAAAATGGTCCCTTTATATTGGTTACTCCGAATGACATGAAATTCTTTTTTCCGGACATTCTTTCTCATAACAAAGCAACGACTTCTACACATTATTTTAATACCATTTTGCACTATGTTAATATATGATGTTATAAAATCATGCCAGAATAAAAAAACATATACATTTATTACATTTTAAGATATTTTAATCACAAATGAAATGGCTGTATTGGCCTTTGGACGGTTAAACCGAATGACCTTTTGACACTTCAAACTCTTTTAAAATACCTTTATATGTAGAAAAATATAATTAAAACCTTTTGGATTCAATAAAAGTGATCTAGTTGTACTACCTTACGTACTTTGGATGTCATATCTTTGTTTTTTTATTATTAAGGCCTTTGGACAAAAAAATGACCCGTCACGTCATTGACCCATAAACTTGGAATAATCATAAACTGACAGTTTGGGGAGACACGATTTTGAAGGAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208829 lncRNA downstream 678 696502 ~ 697701 (-) True G183904
TU208858 lncRNA downstream 9403 688035 ~ 688976 (-) True G183932
TU208857 lncRNA downstream 14363 683750 ~ 684016 (-) True G183931
TU208855 lncRNA downstream 16652 681437 ~ 681727 (-) True G183929
TU208850 lncRNA downstream 20185 677911 ~ 678194 (-) True G183924
TU208864 lncRNA upstream 13759 713116 ~ 726854 (-) True G183937
TU208871 lncRNA upstream 40625 739982 ~ 740212 (-) True G183944
TU208883 lncRNA upstream 95101 794458 ~ 794721 (-) True G183956
TU208884 lncRNA upstream 96745 796102 ~ 796331 (-) True G183957
TU208885 lncRNA upstream 97582 796939 ~ 797169 (-) True G183958
CI01000040_00626750_00628543.mRNA mRNA downstream 69820 626481 ~ 628559 (-) False CI01000040_00626750_00628543
CI01000040_00623449_00625433.mRNA mRNA downstream 72343 623423 ~ 626036 (-) True CI01000040_00623449_00625433
CI01000040_00569008_00598590.mRNA mRNA downstream 99789 568760 ~ 598590 (-) True CI01000040_00569008_00598590
CI01000040_00413047_00426023.mRNA mRNA downstream 271315 413005 ~ 427064 (-) False CI01000040_00413047_00426023
CI01000040_00153873_00173202.mRNA mRNA downstream 525177 153873 ~ 173202 (-) True CI01000040_00153873_00173202
CI01000040_00701332_00746419.mRNA mRNA upstream 1476 700833 ~ 746964 (-) True CI01000040_00701332_00746419
CI01000040_00760116_00779888.mRNA mRNA upstream 60759 760116 ~ 780882 (-) True CI01000040_00760116_00779888
CI01000040_00795062_00809762.mRNA mRNA upstream 95580 794937 ~ 809762 (-) True CI01000040_00795062_00809762
CI01000040_00810717_00829640.mRNA mRNA upstream 111052 810409 ~ 829640 (-) True CI01000040_00810717_00829640
CI01000040_00837863_00839807.mRNA mRNA upstream 138106 837463 ~ 839807 (-) True CI01000040_00837863_00839807
TU208782 other downstream 69685 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208367 other downstream 647653 46627 ~ 50726 (-) True G183474
TU208899 other upstream 133783 833140 ~ 833541 (-) True G183972
TU210608 other upstream 1895889 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 1896022 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 2292831 2992188 ~ 2992683 (-) True G185593
TU210881 other upstream 2645118 3344475 ~ 3344880 (-) True G185681

Expression Profile