Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU208690 |
| length | 1173 |
| lncRNA type | antisense_over |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G183775 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 700312 ~ 701605 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU208696 | lncRNA | upstream | 138 | 699712 ~ 700174 (+) | True | G183780 |
| TU208694 | lncRNA | upstream | 2546 | 697294 ~ 697766 (+) | True | G183778 |
| TU208729 | lncRNA | upstream | 4869 | 694887 ~ 695443 (+) | True | G183813 |
| TU208718 | lncRNA | upstream | 30642 | 669431 ~ 669670 (+) | True | G183802 |
| TU208716 | lncRNA | upstream | 31595 | 668513 ~ 668717 (+) | True | G183800 |
| TU208738 | lncRNA | downstream | 27446 | 729051 ~ 733191 (+) | True | G183822 |
| TU208742 | lncRNA | downstream | 40449 | 742054 ~ 742277 (+) | True | G183825 |
| TU208744 | lncRNA | downstream | 46389 | 747994 ~ 748295 (+) | True | G183827 |
| TU208745 | lncRNA | downstream | 49170 | 750775 ~ 751079 (+) | True | G183828 |
| TU208746 | lncRNA | downstream | 49593 | 751198 ~ 751473 (+) | True | G183829 |
| CI01000040_00643738_00689792.mRNA | mRNA | upstream | 10394 | 643738 ~ 689918 (+) | True | CI01000040_00643738_00689792 |
| CI01000040_00554753_00561571.mRNA | mRNA | upstream | 137319 | 554753 ~ 562993 (+) | True | CI01000040_00554753_00561571 |
| CI01000040_00512880_00513451.mRNA | mRNA | upstream | 186715 | 512880 ~ 513597 (+) | True | CI01000040_00512880_00513451 |
| CI01000040_00366809_00384965.mRNA | mRNA | upstream | 315053 | 366709 ~ 385259 (+) | True | CI01000040_00366809_00384965 |
| CI01000040_00347516_00350540.mRNA | mRNA | upstream | 349711 | 347516 ~ 350601 (+) | True | CI01000040_00347516_00350540 |
| CI01000040_00839831_00841736.mRNA | mRNA | downstream | 138226 | 839831 ~ 841736 (+) | True | CI01000040_00839831_00841736 |
| CI01000040_00849226_00851895.mRNA | mRNA | downstream | 147621 | 849226 ~ 851915 (+) | True | CI01000040_00849226_00851895 |
| CI01000040_00863147_00874526.mRNA | mRNA | downstream | 161542 | 863147 ~ 874546 (+) | True | CI01000040_00863147_00874526 |
| CI01000040_00879146_00889251.mRNA | mRNA | downstream | 177541 | 879146 ~ 889483 (+) | True | CI01000040_00879146_00889251 |
| CI01000040_00895179_00895620.mRNA | mRNA | downstream | 193574 | 895179 ~ 895649 (+) | False | CI01000040_00895179_00895620 |
| TU208290 | other | upstream | 423457 | 197712 ~ 276855 (+) | True | G183418 |
| TU208294 | other | upstream | 535390 | 157543 ~ 164922 (+) | True | G183420 |
| TU208230 | other | upstream | 639915 | 53691 ~ 60397 (+) | True | G183366 |
| TU208979 | other | downstream | 272508 | 974113 ~ 974246 (+) | True | G184034 |
| TU208940 | other | downstream | 528687 | 1230292 ~ 1236489 (+) | True | G184003 |
| TU210451 | other | downstream | 2631973 | 3333578 ~ 3333983 (+) | True | G185296 |
| TU211111 | other | downstream | 3037382 | 3738987 ~ 3739281 (+) | True | G185884 |
| TU211185 | other | downstream | 3272160 | 3973765 ~ 3974123 (+) | True | G185947 |
