RNA id: TU208742



Basic Information


Item Value
RNA id TU208742
length 224
lncRNA type intronic
GC content 0.44
exon number 1
gene id G183825
representative True

Chromosome Information


Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 742054 ~ 742277 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAACAACACTCGACTACAACAACTCTTCCTCTTCTCTAAAGTAGCCCAACATGGCCTCACCCCCTTTGTTGTGTGTTCTCGGGGGCGGGGTTTATGTAAATTTTAGGGTTAGTGATGTCACTAACCCAGGAAGAAGCTCGTTGTAGTCCCTACCAGCCGTTTGTTGTAGTCCTTAAAAAGCGATTTCTGTAAAAGAAAATATCTCCCTTTGCATTGAACTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208738 lncRNA upstream 8863 729051 ~ 733191 (+) True G183822
TU208690 lncRNA upstream 40449 700312 ~ 701605 (+) True G183775
TU208696 lncRNA upstream 41880 699712 ~ 700174 (+) True G183780
TU208694 lncRNA upstream 44288 697294 ~ 697766 (+) True G183778
TU208729 lncRNA upstream 46611 694887 ~ 695443 (+) True G183813
TU208744 lncRNA downstream 5717 747994 ~ 748295 (+) True G183827
TU208745 lncRNA downstream 8498 750775 ~ 751079 (+) True G183828
TU208746 lncRNA downstream 8921 751198 ~ 751473 (+) True G183829
TU208747 lncRNA downstream 9293 751570 ~ 751928 (+) True G183830
TU208748 lncRNA downstream 10408 752685 ~ 753250 (+) True G183831
CI01000040_00643738_00689792.mRNA mRNA upstream 52136 643738 ~ 689918 (+) True CI01000040_00643738_00689792
CI01000040_00554753_00561571.mRNA mRNA upstream 179061 554753 ~ 562993 (+) True CI01000040_00554753_00561571
CI01000040_00512880_00513451.mRNA mRNA upstream 228457 512880 ~ 513597 (+) True CI01000040_00512880_00513451
CI01000040_00366809_00384965.mRNA mRNA upstream 356795 366709 ~ 385259 (+) True CI01000040_00366809_00384965
CI01000040_00347516_00350540.mRNA mRNA upstream 391453 347516 ~ 350601 (+) True CI01000040_00347516_00350540
CI01000040_00839831_00841736.mRNA mRNA downstream 97554 839831 ~ 841736 (+) True CI01000040_00839831_00841736
CI01000040_00849226_00851895.mRNA mRNA downstream 106949 849226 ~ 851915 (+) True CI01000040_00849226_00851895
CI01000040_00863147_00874526.mRNA mRNA downstream 120870 863147 ~ 874546 (+) True CI01000040_00863147_00874526
CI01000040_00879146_00889251.mRNA mRNA downstream 136869 879146 ~ 889483 (+) True CI01000040_00879146_00889251
CI01000040_00895179_00895620.mRNA mRNA downstream 152902 895179 ~ 895649 (+) False CI01000040_00895179_00895620
TU208290 other upstream 465199 197712 ~ 276855 (+) True G183418
TU208294 other upstream 577132 157543 ~ 164922 (+) True G183420
TU208230 other upstream 681657 53691 ~ 60397 (+) True G183366
TU208979 other downstream 231836 974113 ~ 974246 (+) True G184034
TU208940 other downstream 488015 1230292 ~ 1236489 (+) True G184003
TU210451 other downstream 2591301 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 2996710 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 3231488 3973765 ~ 3974123 (+) True G185947

Expression Profile